Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00358 | ATGGCTGAGATTTGGTTTAATGGTGCAGATGATGCCGAACCCTCTCCCCTGCCAAAATCTCGACCTCGCCGAAAAATGGACTTACTTCAACACAAAGCCTTCGCCGCCGCCGCTGCCGACGACGATAGTACGGCGAGTGCTTCGTCTTCGGGACGGAAACGCCGCAGTATGCATTCGTTATCACGGCAGTGCGAAAATGAAGATCATGAAAACAGGGGACAGAGGAATGATGATGTTAAATATGGGGTTACCTCTGTTTGTGGAAGAAGAAGAGAAATGGAAGATGCGGTTTCTGTTCATCTTTACTTTGCTACTCAAAAGAACCAACCCCAAATTCCTCTTCACTTTTTTGGGGTCTTCGACGGCCATGGTTGCTCTCATGTGTCGATGAGATGTAAGAATCGAATGCATGAAATAATGAAAGAAGAGATTGATGAAAGGGAATTAGAAGAAACAGAGGAATGGAAGAAAATAATGCGAAGAAGCTTTGGGCGTATGGATGAGGAAGTAATGAAACAGAGAGATGCCTCTTCTTCTTCTTCCTCTGAATCTAATAATATCAGTTGCAGATGTGAACTACAAAATCCTCATCAATACGACACCGTTGGATCCACTGCTCTCATTGCGCTCCTAATGCCTCATAAGTTCATCATCGCTAACTGCGGCGATTCCCGCGCCGTCCTTTCCCGGAAAACTACCGGAATCCTCCCTCTCTCCTCCGACCATAAGCCAGATCGGCCAGATGAATTGTTGCGAATAGAATCTGGAGGCGGGCGTGTGATATACTGGGAAGGGGCGAGAGTGTTGGGAGTTTTAGCAACGTCAAGAGCAATAGGCGACGTTTCTTTAAAGCCTTACGTGATATCAGAACCAGAGGTGGTGGTAATAGATCGAACAACAGAGGATGAATTTATCATATTGGCTACCGACGGCTTGTGGGACGTCGTTACAAATGAAACTGCATGCGACGCAGTCCGAGCGTGCATGCGGGCACATCAACCGCCGCTGTCGTCGTCGTCGGGGTCTATGAGTGGCAGCTCTTGCAAAACATGTTCGGACGCCTCCATTTTGCTGACCAAGTTGGCCTTGGCGAAGCATAGTTCAGATAACATTAGCATTGTGGTGGTAGATTTGAGAACATAA | 1143 | 47.33 | MAEIWFNGADDAEPSPLPKSRPRRKMDLLQHKAFAAAAADDDSTASASSSGRKRRSMHSLSRQCENEDHENRGQRNDDVKYGVTSVCGRRREMEDAVSVHLYFATQKNQPQIPLHFFGVFDGHGCSHVSMRCKNRMHEIMKEEIDERELEETEEWKKIMRRSFGRMDEEVMKQRDASSSSSSESNNISCRCELQNPHQYDTVGSTALIALLMPHKFIIANCGDSRAVLSRKTTGILPLSSDHKPDRPDELLRIESGGGRVIYWEGARVLGVLATSRAIGDVSLKPYVISEPEVVVIDRTTEDEFIILATDGLWDVVTNETACDAVRACMRAHQPPLSSSSGSMSGSSCKTCSDASILLTKLALAKHSSDNISIVVVDLRT | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4227142 | 4228475 | - | Lsi03G003580.1 | Lsi03g00358 | 658108 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00358 | 380 | PANTHER | ALPHABET, ISOFORM E-RELATED | 52 | 379 | - | - | |
Lsi03g00358 | 380 | SUPERFAMILY | PP2C-like | 76 | 379 | IPR036457 | - | |
Lsi03g00358 | 380 | SMART | PP2C_SIG_2 | 97 | 378 | IPR001932 | - | |
Lsi03g00358 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C 3 | 52 | 379 | - | - | |
Lsi03g00358 | 380 | MobiDBLite | consensus disorder prediction | 16 | 30 | - | - | |
Lsi03g00358 | 380 | SMART | PP2C_4 | 70 | 376 | IPR001932 | - | |
Lsi03g00358 | 380 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
Lsi03g00358 | 380 | ProSitePatterns | PPM-type phosphatase domain signature. | 116 | 124 | IPR000222 | GO:0043169 | |
Lsi03g00358 | 380 | ProSiteProfiles | PPM-type phosphatase domain profile. | 80 | 378 | IPR001932 | - | |
Lsi03g00358 | 380 | CDD | PP2Cc | 79 | 378 | IPR001932 | - | |
Lsi03g00358 | 380 | Gene3D | - | 69 | 380 | IPR036457 | - | |
Lsi03g00358 | 380 | Pfam | Protein phosphatase 2C | 80 | 371 | IPR001932 | - | |
Lsi03g00358 | 380 | MobiDBLite | consensus disorder prediction | 58 | 77 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00358 | Lsi-Chr3:4227142 | Lsi05g00087 | Lsi-Chr5:1595355 | 7.61E-76 | dispersed | |
Lsi02g02662 | Lsi-Chr2:33098364 | Lsi03g00358 | Lsi-Chr3:4227142 | 4.18E-28 | transposed | |
Lsi04g01346 | Lsi-Chr4:21213825 | Lsi03g00358 | Lsi-Chr3:4227142 | 1.67E-28 | transposed | |
Lsi02g01331 | Lsi-Chr2:17811663 | Lsi03g00358 | Lsi-Chr3:4227142 | 2.87E-108 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00358 | K14497 | - | csv:101220425 | 520.005 |