Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00358 ATGGCTGAGATTTGGTTTAATGGTGCAGATGATGCCGAACCCTCTCCCCTGCCAAAATCTCGACCTCGCCGAAAAATGGACTTACTTCAACACAAAGCCTTCGCCGCCGCCGCTGCCGACGACGATAGTACGGCGAGTGCTTCGTCTTCGGGACGGAAACGCCGCAGTATGCATTCGTTATCACGGCAGTGCGAAAATGAAGATCATGAAAACAGGGGACAGAGGAATGATGATGTTAAATATGGGGTTACCTCTGTTTGTGGAAGAAGAAGAGAAATGGAAGATGCGGTTTCTGTTCATCTTTACTTTGCTACTCAAAAGAACCAACCCCAAATTCCTCTTCACTTTTTTGGGGTCTTCGACGGCCATGGTTGCTCTCATGTGTCGATGAGATGTAAGAATCGAATGCATGAAATAATGAAAGAAGAGATTGATGAAAGGGAATTAGAAGAAACAGAGGAATGGAAGAAAATAATGCGAAGAAGCTTTGGGCGTATGGATGAGGAAGTAATGAAACAGAGAGATGCCTCTTCTTCTTCTTCCTCTGAATCTAATAATATCAGTTGCAGATGTGAACTACAAAATCCTCATCAATACGACACCGTTGGATCCACTGCTCTCATTGCGCTCCTAATGCCTCATAAGTTCATCATCGCTAACTGCGGCGATTCCCGCGCCGTCCTTTCCCGGAAAACTACCGGAATCCTCCCTCTCTCCTCCGACCATAAGCCAGATCGGCCAGATGAATTGTTGCGAATAGAATCTGGAGGCGGGCGTGTGATATACTGGGAAGGGGCGAGAGTGTTGGGAGTTTTAGCAACGTCAAGAGCAATAGGCGACGTTTCTTTAAAGCCTTACGTGATATCAGAACCAGAGGTGGTGGTAATAGATCGAACAACAGAGGATGAATTTATCATATTGGCTACCGACGGCTTGTGGGACGTCGTTACAAATGAAACTGCATGCGACGCAGTCCGAGCGTGCATGCGGGCACATCAACCGCCGCTGTCGTCGTCGTCGGGGTCTATGAGTGGCAGCTCTTGCAAAACATGTTCGGACGCCTCCATTTTGCTGACCAAGTTGGCCTTGGCGAAGCATAGTTCAGATAACATTAGCATTGTGGTGGTAGATTTGAGAACATAA 1143 47.33 MAEIWFNGADDAEPSPLPKSRPRRKMDLLQHKAFAAAAADDDSTASASSSGRKRRSMHSLSRQCENEDHENRGQRNDDVKYGVTSVCGRRREMEDAVSVHLYFATQKNQPQIPLHFFGVFDGHGCSHVSMRCKNRMHEIMKEEIDERELEETEEWKKIMRRSFGRMDEEVMKQRDASSSSSSESNNISCRCELQNPHQYDTVGSTALIALLMPHKFIIANCGDSRAVLSRKTTGILPLSSDHKPDRPDELLRIESGGGRVIYWEGARVLGVLATSRAIGDVSLKPYVISEPEVVVIDRTTEDEFIILATDGLWDVVTNETACDAVRACMRAHQPPLSSSSGSMSGSSCKTCSDASILLTKLALAKHSSDNISIVVVDLRT 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4227142 4228475 - Lsi03G003580.1 Lsi03g00358 658108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00358 380 PANTHER ALPHABET, ISOFORM E-RELATED 52 379 - -
Lsi03g00358 380 SUPERFAMILY PP2C-like 76 379 IPR036457 -
Lsi03g00358 380 SMART PP2C_SIG_2 97 378 IPR001932 -
Lsi03g00358 380 PANTHER PROTEIN PHOSPHATASE 2C 3 52 379 - -
Lsi03g00358 380 MobiDBLite consensus disorder prediction 16 30 - -
Lsi03g00358 380 SMART PP2C_4 70 376 IPR001932 -
Lsi03g00358 380 MobiDBLite consensus disorder prediction 1 77 - -
Lsi03g00358 380 ProSitePatterns PPM-type phosphatase domain signature. 116 124 IPR000222 GO:0043169
Lsi03g00358 380 ProSiteProfiles PPM-type phosphatase domain profile. 80 378 IPR001932 -
Lsi03g00358 380 CDD PP2Cc 79 378 IPR001932 -
Lsi03g00358 380 Gene3D - 69 380 IPR036457 -
Lsi03g00358 380 Pfam Protein phosphatase 2C 80 371 IPR001932 -
Lsi03g00358 380 MobiDBLite consensus disorder prediction 58 77 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00358 Lsi-Chr3:4227142 Lsi05g00087 Lsi-Chr5:1595355 7.61E-76 dispersed
Lsi02g02662 Lsi-Chr2:33098364 Lsi03g00358 Lsi-Chr3:4227142 4.18E-28 transposed
Lsi04g01346 Lsi-Chr4:21213825 Lsi03g00358 Lsi-Chr3:4227142 1.67E-28 transposed
Lsi02g01331 Lsi-Chr2:17811663 Lsi03g00358 Lsi-Chr3:4227142 2.87E-108 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00358 K14497 - csv:101220425 520.005