Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00361 | ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCAAACGCAGAACAAGAACATCATAGTCAACAACAACATAGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTAATCACTAAACACACTCCCAACGCCTTTCAAACCCACGTTTTCCAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACCTTCGCCTACCGCCGCCACCGTGGCCTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGTGTCATTACCCTCCACGAACGCTTCGAGATCTTGTCTCTCTCTGGCGCTTTCCTCCCCACGCCCTCCCCCCACAGGGCTACTGCCTTGACCGTCTATCTCGCCGGCGGCCAAGGCCGAGTCGTCGGAGGCCGAGTCGCCGGTCCCCTCATCGCCGCCGGCCCCGTCATAGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTGCCGATTGAAGAAGATGAAGAGAATGCAAAGGAAGAGGAGAAATTGGACGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTAGCAGCAGCAGCAGCAGCAGCAGAAACTTCTTTGCCAGTTTATAATTTGATTCCAAACAATCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCCCCATCTTATTAA | 759 | 50.72 | MADRCWGGIGNLANAEQEHHSQQQHSTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFQITTATDIAHSISTFAYRRHRGLSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHRATALTVYLAGGQGRVVGGRVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAKEEEKLDENINGNNSVGESSSVAAAAAAAETSLPVYNLIPNNQISQEMFWAPLPLPPPSY | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 4260949 | 4261707 | + | Lsi03G003610.1 | Lsi03g00361 | 658111 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00361 | 252 | Gene3D | - | 67 | 194 | - | - | |
| Lsi03g00361 | 252 | MobiDBLite | consensus disorder prediction | 186 | 215 | - | - | |
| Lsi03g00361 | 252 | CDD | DUF296 | 67 | 175 | IPR005175 | - | |
| Lsi03g00361 | 252 | PIRSF | ESCAROLA | 9 | 244 | IPR014476 | GO:0003680 | |
| Lsi03g00361 | 252 | MobiDBLite | consensus disorder prediction | 21 | 40 | - | - | |
| Lsi03g00361 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 18 | 252 | IPR014476 | GO:0003680 | |
| Lsi03g00361 | 252 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Lsi03g00361 | 252 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 63 | 189 | - | - | |
| Lsi03g00361 | 252 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 68 | 177 | IPR005175 | - | |
| Lsi03g00361 | 252 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 18 | 252 | - | - | |
| Lsi03g00361 | 252 | ProSiteProfiles | PPC domain profile profile. | 63 | 199 | IPR005175 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Lsi03g00361 | Lsi04g00903 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00361 | Lsi-Chr3:4260949 | Lsi09g01252 | Lsi-Chr9:20189174 | 1.46E-62 | dispersed | |
| Lsi03g00361 | Lsi-Chr3:4260949 | Lsi04g00903 | Lsi-Chr4:9064455 | 1.19E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00361 | - | - | cmos:111444826 | 328.946 |