Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00361 ATGGCGGATAGATGTTGGGGTGGAATTGGGAATCTTGCAAACGCAGAACAAGAACATCATAGTCAACAACAACATAGTACTAAGAATGAAGATGAGGATGGAATTAAAACCAAGAGACGGCCACGAGGGCGACCACCAGGCTCAAAAAACAAGCCAAAGCCACCCATTGTAATCACTAAACACACTCCCAACGCCTTTCAAACCCACGTTTTCCAAATCACCACCGCCACCGACATTGCCCACTCCATTTCCACCTTCGCCTACCGCCGCCACCGTGGCCTTTCCATTCTCAGCGCCACCGGCCTCGTCGCTGACGTCACTCTCCGACAACCCCCCGGTGTCATTACCCTCCACGAACGCTTCGAGATCTTGTCTCTCTCTGGCGCTTTCCTCCCCACGCCCTCCCCCCACAGGGCTACTGCCTTGACCGTCTATCTCGCCGGCGGCCAAGGCCGAGTCGTCGGAGGCCGAGTCGCCGGTCCCCTCATCGCCGCCGGCCCCGTCATAGTAGTTGCAGCTTCATTTACCAACGCTATGTATGAAAAATTGCCGATTGAAGAAGATGAAGAGAATGCAAAGGAAGAGGAGAAATTGGACGAAAATATTAATGGAAATAATTCAGTGGGAGAATCATCATCAGTAGCAGCAGCAGCAGCAGCAGCAGAAACTTCTTTGCCAGTTTATAATTTGATTCCAAACAATCAAATTTCACAAGAAATGTTTTGGGCTCCTCTTCCTCTTCCTCCCCCATCTTATTAA 759 50.72 MADRCWGGIGNLANAEQEHHSQQQHSTKNEDEDGIKTKRRPRGRPPGSKNKPKPPIVITKHTPNAFQTHVFQITTATDIAHSISTFAYRRHRGLSILSATGLVADVTLRQPPGVITLHERFEILSLSGAFLPTPSPHRATALTVYLAGGQGRVVGGRVAGPLIAAGPVIVVAASFTNAMYEKLPIEEDEENAKEEEKLDENINGNNSVGESSSVAAAAAAAETSLPVYNLIPNNQISQEMFWAPLPLPPPSY 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 4260949 4261707 + Lsi03G003610.1 Lsi03g00361 658111
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00361 252 Gene3D - 67 194 - -
Lsi03g00361 252 MobiDBLite consensus disorder prediction 186 215 - -
Lsi03g00361 252 CDD DUF296 67 175 IPR005175 -
Lsi03g00361 252 PIRSF ESCAROLA 9 244 IPR014476 GO:0003680
Lsi03g00361 252 MobiDBLite consensus disorder prediction 21 40 - -
Lsi03g00361 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 252 IPR014476 GO:0003680
Lsi03g00361 252 MobiDBLite consensus disorder prediction 1 58 - -
Lsi03g00361 252 SUPERFAMILY AF0104/ALDC/Ptd012-like 63 189 - -
Lsi03g00361 252 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 177 IPR005175 -
Lsi03g00361 252 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 18 252 - -
Lsi03g00361 252 ProSiteProfiles PPC domain profile profile. 63 199 IPR005175 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Lsi03g00361 Lsi04g00903 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00361 Lsi-Chr3:4260949 Lsi09g01252 Lsi-Chr9:20189174 1.46E-62 dispersed
Lsi03g00361 Lsi-Chr3:4260949 Lsi04g00903 Lsi-Chr4:9064455 1.19E-68 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00361 - - cmos:111444826 328.946