Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00367 ATGCACTTGAGTTTGAGTGCACTCATCTTACAGTCCTTTGGTTCCATTGGATGCGCAAATGATGGGAAAATATTCACATTACTCCGAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGGCGTGCAATGAGGGTTCATGCAGCACGTCCCGTTAACTCAAACTCACTTGCCTTTCTCGTCACAGTTCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAGGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCTCCATCAGTAGCACTTGCAACTAGAGGGCGTTTACAAGGGTTAAGGCTTCAACTTGCTCTACTGGATCGGGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGATAATGCTCCGACGACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAGTACAAGGTTTCTGGTCCTCAAAGTGACCCCTCTGTGAATCAGCAGGCTTCATCTTCAGAATCTAATGAGAAGAGACAAGATTCAGTTAATGCAGTTGGCGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTGCACCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCCGGGTGGTCGGAACAGGGGCAAGGGGAAACCGATGCTTATATGGTTTAA 945 45.08 MHLSLSALILQSFGSIGCANDGKIFTLLRNQLAVATIADMSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSVALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4314295 4317810 + Lsi03G003670.1 Lsi03g00367 658117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00367 314 MobiDBLite consensus disorder prediction 210 244 - -
Lsi03g00367 314 CDD RING-H2_PA-TM-RING 252 294 - -
Lsi03g00367 314 Pfam Ring finger domain 252 294 IPR001841 -
Lsi03g00367 314 SMART ring_2 253 293 IPR001841 -
Lsi03g00367 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 298 IPR013083 -
Lsi03g00367 314 SUPERFAMILY RING/U-box 247 300 - -
Lsi03g00367 314 PANTHER TARGET OF ERK KINASE MPK-1 40 313 - -
Lsi03g00367 314 MobiDBLite consensus disorder prediction 215 244 - -
Lsi03g00367 314 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Lsi03g00367 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 40 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00367 Lsi-Chr3:4314295 Lsi11g01713 Lsi-Chr11:25248980 5.02E-14 dispersed
Lsi11g00386 Lsi-Chr11:3993563 Lsi03g00367 Lsi-Chr3:4314295 2.54E-12 dispersed
Lsi03g00367 Lsi-Chr3:4314295 Lsi02g01479 Lsi-Chr2:20533778 2.16E-13 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00367 K16283 - csv:101216306 501.901