Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00391 ATGAATATTATTGGGAGCATTGGAGCAGTGGCTGCTGGGCTAGATCTTGGGAAAGAAGGGCCTCTAGTACACATTGGCAGCTGTATTGCTTCTTTACTTGGACAGGGTGGTCCGGATAATTATCGAGTCAAATGGACGTGGCTACGCTATTTCAACAACGATCGTGATCGGCGGGATCTTATCACATGCGGTGCATCATCAGGGGTTTGTGCAGCTTTCCGAGCTCCGGTCGGGGGTGTTTTATTTGCTTTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTCTTCAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATCATGTTTGATGTCAGTGGTGTTTCTGTTAGTTACCATATCATGGACATCATACCAGTTGCTATTGTTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTCCACAAAATCCTCAGAGTATACAACCTCATCAATCAGAAAGGAAGAATGCACAAACTATTACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGTCCAATGCACCCCCTGCAACGCTTCTCTTCCAGATTCTGCCTGCCCTACCAATGGCCGCTCCGGCAACTTCAAGCAATTCAACTGTCCTAAAGGACATTACAACGACCTTGCCACCCTTCTTCTCACCACCAACGACGACGCCGTTCGAAATATCTTCTCCACCAACACTCCCGCTGAGTATCAGCCTCTTTCCCTCGTCATCTTCTTCCTCCTTTACTGCGTGTTAGGGTTAATCACCTTCGGTATCGCCGTCCCCTCCGGTCTCTTCCTTCCGATCATCTTGATGGGCTCTGGCTATGGCCGCCTCATCGGCCTCCTCATGCGACCTTACACCAATATCGATCAAGGACTCTTGGCTGTTCTCGGTGCTGCCTCATTAATGGCCGGCTCCATGCGAATGACCGTTTCCCTCTGTGTCATATTCCTCGAACTCACCAACAATCTCCTTCTGCTTCCGATTACCATGATTGTTCTTCTAATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGTATTTACGACATCATTCTGCATCTGAAAGGGCTTCCATTCCTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTGGGCGAGCTGGCCGACGCGAAGCCAGCGGTGGTGACGCTGCGGGGACTAGAGAAAGTATCCCGCATTGTGGAGGTTCTTAGGAACACGACGCACAATGGATTCCCTGTTGTGGACGCGGATGCGGTGGTGCCACCGGTGGGAATGGCGGTAGGGGCGACGGAGCTGCATGGGCTGGTGCTGAGAGCGCATCTGCTACAAGTGCTGAAGAAGAAATGGTTCTTGAGAGAGAGGAGGAGAACGGAGGAATGGGAGGTGAGGGAGAAATTTACATGGGTGGAATTAGCAGAGAGGGAAGGGAAGATCGAGGAGCTTGTAGTTACGAAAGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAGAGCATGTCTGTGGCGAAAGCTCTGGTTCTGTTCCGGCAAGTAGGGCTCCGCCATTTGTTGATTGTGCCCAAATATGAAGCAGCTGGGGTAAGCTCTGCTTCTTCTTCATCTTCATCTTCTTCTTCATTACTCCATCAAATAATTTACAGGCATCAAATTTCTGTTCCGCCAGTAATTGGGATTTTGACGAGGCAGGATTTAAGGCCATACAACATTCTGAGTGCATTTCCTCATCTGGAAAGAATCAAAGGCGACGAAAAACGCAACTGA 1878 49.41 MNIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIVGLLGGFLGSLYNHLLHKILRVYNLINQKGRMHKLLLSLGVSLFTSICQYSLPYLVQCTPCNASLPDSACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSTNTPAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNIDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEEWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVSSASSSSSSSSSLLHQIIYRHQISVPPVIGILTRQDLRPYNILSAFPHLERIKGDEKRN 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4533518 4536028 - Lsi03G003910.1 Lsi03g00391 658141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00391 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 2 568 - -
Lsi03g00391 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 581 619 - -
Lsi03g00391 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 568 - -
Lsi03g00391 625 Pfam Voltage gated chloride channel 2 373 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 SUPERFAMILY CBS-domain pair 397 561 IPR046342 -
Lsi03g00391 625 PRINTS Plant CLC chloride channel signature 101 111 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi03g00391 625 PRINTS Plant CLC chloride channel signature 87 95 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi03g00391 625 PRINTS Plant CLC chloride channel signature 119 126 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi03g00391 625 PRINTS Plant CLC chloride channel signature 244 260 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lsi03g00391 625 CDD CBS_pair_voltage-gated_CLC_euk_bac 413 606 - -
Lsi03g00391 625 Gene3D Clc chloride channel 1 395 - -
Lsi03g00391 625 PRINTS Chloride channel signature 66 85 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PRINTS Chloride channel signature 2 21 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PRINTS Chloride channel signature 324 340 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PRINTS Chloride channel signature 380 394 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PRINTS Chloride channel signature 292 312 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PRINTS Chloride channel signature 342 361 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lsi03g00391 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC-A 581 619 - -
Lsi03g00391 625 SUPERFAMILY Clc chloride channel 3 395 IPR014743 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00391 Lsi-Chr3:4533518 Lsi05g00719 Lsi-Chr5:9778960 0 dispersed
Lsi03g00391 Lsi-Chr3:4533518 Lsi11g00348 Lsi-Chr11:3654966 6.25E-21 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00391 K05016 - csv:101210008 1113.21