Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00392 ATGTATAAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTTCACTGCACCAATGGATGAAAATTCAAGCCTGGTCACAGAATCAACTCTCACAAACACCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGTAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCACGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACACTGGCTTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTCTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTATTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCTTATCTCAATGGTATAGACACTCCTAATATGTTTGGTGCCACGACGTTGATCGTTAAGGTGCGTATGCCACACACTTTCTTGTTGAATCTCAGCGCAACGAACACCGTCGATCAAATCAACTTTGGATTGTCATCACTGTGTATTGCCATATCCTCATTCGCTTTTGATTGA 777 42.86 MYKQRRSFALSSKPQNLTIFSSLCVHFTAPMDENSSLVTESTLTNTMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAILCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKVRMPHTFLLNLSATNTVDQINFGLSSLCIAISSFAFD 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4536068 4538097 - Lsi03G003920.1 Lsi03g00392 658142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00392 258 MobiDBLite consensus disorder prediction 45 66 - -
Lsi03g00392 258 Gene3D Clc chloride channel 112 225 - -
Lsi03g00392 258 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 31 222 - -
Lsi03g00392 258 PANTHER CHLORIDE CHANNEL PROTEIN 31 222 - -
Lsi03g00392 258 SUPERFAMILY Clc chloride channel 99 222 IPR014743 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00392 Lsi-Chr3:4536068 Lsi05g00719 Lsi-Chr5:9778960 9.83E-50 dispersed
Lsi03g00392 Lsi-Chr3:4536068 Lsi11g00348 Lsi-Chr11:3654966 1.33E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00392 K05016 - csv:101210008 359.762