Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00398 ATGGAAGTTGAATCACAATCAGAGTTCCCGTACTGGAAGCCTTTCCAACGGAGGTTCGATCCCGATTCTCCGTTCTTTGCCTCTGGAAATGTCGAGCGGGAAATCTTAGCCAAACAGGTTGCCTTGGATTTAACCGAAGATGAAAAGCTACAGCTGCATAATATGGCAGTTGATGCTAGCAGTGAAATCTTTTGCCCAATTGTTGGTTGCGGTGCACACTTGAAATCTCTGGATGACTTTGAAGATCATTACAATTCACGGCATACTGCCTCTTGTTCAGTTTGCCCTAGAGTTTACCCGACATCACGCTTACTTAGTTTACATGTGTCTGAGGCGCATGACGCGTTCTTTCAAGCAAAAGTTGCGCGTGGCTATGACATGTATGAATGCCTGGTGGAAGGTTGTGGTTTGAAGTTCAAAAGCTACAAAAGCAGACAGCAGCATCTAGTGGATAAGCATAAATTTTCTGCTTCATTTGAATTCTTTAAGAAAGCTCATCCATCTAAGAAACAAAGACAGAAATTACATCGTAAACAAGCCGTTCAAGGAAGGGAAGAAACCTCCGAAATGGAAGTTGAGAAGGAAACTATAGATGGCCTCATTTCAGGAGTATCTAAACTAAGTACTTCAGACTCAACTCCTTCGACAATCAGCTTTGGCCGGAGGCACACTCGAGGGTTAACATTTGTTCCTCGATCAGTTCAGCGAGAAAAAGTGTCAGACTCCTCAACAGCTGGAACGAAGAGATGA 750 43.6 MEVESQSEFPYWKPFQRRFDPDSPFFASGNVEREILAKQVALDLTEDEKLQLHNMAVDASSEIFCPIVGCGAHLKSLDDFEDHYNSRHTASCSVCPRVYPTSRLLSLHVSEAHDAFFQAKVARGYDMYECLVEGCGLKFKSYKSRQQHLVDKHKFSASFEFFKKAHPSKKQRQKLHRKQAVQGREETSEMEVEKETIDGLISGVSKLSTSDSTPSTISFGRRHTRGLTFVPRSVQREKVSDSSTAGTKR 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4564822 4567175 - Lsi03G003980.1 Lsi03g00398 658148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00398 249 ProSitePatterns Zinc finger C2H2 type domain signature. 92 113 IPR013087 -
Lsi03g00398 249 ProSitePatterns Zinc finger C2H2 type domain signature. 130 153 IPR013087 -
Lsi03g00398 249 MobiDBLite consensus disorder prediction 170 249 - -
Lsi03g00398 249 MobiDBLite consensus disorder prediction 202 222 - -
Lsi03g00398 249 PANTHER UNCHARACTERIZED 4 238 IPR039258 -
Lsi03g00398 249 SMART c2h2final6 90 113 IPR013087 -
Lsi03g00398 249 SMART c2h2final6 128 153 IPR013087 -
Lsi03g00398 249 SMART c2h2final6 63 88 IPR013087 -
Lsi03g00398 249 PANTHER ZINC FINGER PROTEIN 511 4 238 - -
Lsi03g00398 249 MobiDBLite consensus disorder prediction 178 196 - -
Lsi03g00398 249 MobiDBLite consensus disorder prediction 235 249 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24967 None None None None Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00398 - - csv:101212859 465.692