Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00399 ATGGCAGCCATGGCAATGCGAGTGGGCTTGTCTTTGGCTCTGGTTTGCATGCTCATTGGGGTCGGCCAGTCCCAGCTCTCGCTCAACTTCTACAATTCGACATGCCCAAATGTCGAACAAATCGGATGTGATGCCTCAGTTATGATAGCGTCTGCAAGTGGTGACGCAGAAAAGGACGCGGAGGACAACTTGTCATTGGCGGGAGATGGATTTGATACCGTGGTTAAGGCGAAACAGGCTGTGGAAGCTCAATGTCCTGGAAAAGTATCATGTGCAGATATACTGGCCATCGCTGCTAGGGACGTTGTGGTTTTGTCGGGAGGGCCAAATTTCGCGGTGGAATTAGGACGGCGAGACGGGCTAATCTCGAAAGCATCTTTGGTAGCAGGAAACCTACCAGGACCAAACTTCAACCTAAGCCAACTAAATGCAATGTTCGCCAAAAATAACTTGACTCAAACCGAAATGATCGCGTTATCAGGAGCCCACACAGTGGGGTTCTCCCACTGCAGCCGTTTTGCGAACCGCATCTACAACTTCTCGGCCACGTCCAACGTGGACCCTTCTCTGGACCCGAACTATGCGAAGCAGCTCATGGATGCCTGCCCCCAAGACGTGGACCCCAGAGTGGCTGTGAACATGGACCCTACAACCCCAAAGAAAATGGACAACGCGTATTACCAAAATCTTGTGAACCACAAAGGGCTTTTCACGTCGGATCAGGTGCTTTTTACGGACTCGTTGTCGCAGACAACTGTGAGTGGCTTTGCTAATGACCGTCGTGGGTTCAATAAAGCGTTTGCGGCAGCTATGGTTCGGCTTGGGAGAGTAGGGGTTAAGACTGGGCTTTTGGGTGAGATTAGAACTGATTGTACTGCATTTAATTCCTAA 891 50.62 MAAMAMRVGLSLALVCMLIGVGQSQLSLNFYNSTCPNVEQIGCDASVMIASASGDAEKDAEDNLSLAGDGFDTVVKAKQAVEAQCPGKVSCADILAIAARDVVVLSGGPNFAVELGRRDGLISKASLVAGNLPGPNFNLSQLNAMFAKNNLTQTEMIALSGAHTVGFSHCSRFANRIYNFSATSNVDPSLDPNYAKQLMDACPQDVDPRVAVNMDPTTPKKMDNAYYQNLVNHKGLFTSDQVLFTDSLSQTTVSGFANDRRGFNKAFAAAMVRLGRVGVKTGLLGEIRTDCTAFNS 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4574066 4575904 + Lsi03G003990.1 Lsi03g00399 658149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00399 296 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Haem peroxidase superfamily signature 215 230 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Haem peroxidase superfamily signature 155 170 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 Gene3D Peroxidase, domain 2 133 274 - -
Lsi03g00399 296 PRINTS Plant peroxidase signature 154 166 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 213 228 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 229 246 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 88 98 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 269 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 69 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PRINTS Plant peroxidase signature 107 122 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 PANTHER - 42 296 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 ProSitePatterns Peroxidases proximal heme-ligand signature. 155 165 IPR019793 -
Lsi03g00399 296 PANTHER PEROXIDASE 42 296 - -
Lsi03g00399 296 Pfam Peroxidase 25 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 CDD secretory_peroxidase 25 294 IPR033905 GO:0004601|GO:0042744
Lsi03g00399 296 SUPERFAMILY Heme-dependent peroxidases 25 295 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 ProSiteProfiles Plant heme peroxidase family profile. 42 295 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00399 296 Gene3D - 42 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00399 Lsi-Chr3:4574066 Lsi03g00401 Lsi-Chr3:4590150 8.02E-141 dispersed
Lsi03g00399 Lsi-Chr3:4574066 Lsi03g00400 Lsi-Chr3:4580677 3.29E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00399 K00430 - csv:101213098 507.294