Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00400 ATGGAATTAGGAAGAAAAGTAGTTTGGTTTTCGGCGGTGTTAATAATTTTAATGGGAATTTATGTGAAAAAAGGAGAAGGGCAACTGGTGGAAAATTTTTATAAATCCAGTTGTCCAAACGTTGAACAAATAGTGAGACAGGCCGTTCAAAATAAGCTCTCCCAAACTTCCATTACCATTCCTGCTACTTTGCGTCTCTTCTTCCATGACTGTTTTGTTGAGGGATGCGATGCTTCGGTCATGATTTCATCGCCAGGCGGAGGCGCCGAGAAGGACGCTCAAGATAACCTTTCCCTCGCCGGAGATGGCTTCGACACCGTCGTCAAGGCAAAGCAGGCCGTCGAAGCCGCCTGTCCCGGCCGAGTCTCTTGCGCCGACATTTTGGCTCTCGCCGCCAGAGACGCCGTCGTCCTCGCGGGAGGCCCAAATTACAACGTCGAATTAGGACGCCGCGACGGCCTGATCTCCAAAGCCTCAAGCGTCGACGGCAATTTACCATCCCCAAATTTCGACCTCAACTCACTGACTTCCATGTTCGCCAGACACGGCCTCTCCCAAACCGACATGATCGCTCTCTCCGGCGCCCACACCATCGGCGCCTCCCATTGCAACCGCTTCTCCGACCGACTCTTCTCTTCTTCCGGCGTAGATCCGTCGCTAAATCCTGCGTACGCGGAACAGTTGAAACAAGCGTGCCCTCGGAATGTGGATCCAAGCGTGGTGGTGAAGCTGGATCCGACCACTCCGGACACTTTCGACAACGTGTATTACCGTAATCTGATGAACGGAAAAGGACTGTTTAGATCGGATGAGGTTCTGTTCACAAACTCGGCGTCGAAGGGGACGGTGGTGGGATTTGCAAACAACGGAGGGCAGTTCAATGCGGCGTTTGTGGAGGCGATGAGGAAGCTTGGGAGAGTGGGAGTTAAGACGGGGAGGGCTGGAGAGATAAGGAAAGATTGTAGTGCCTTCAATTGA 978 52.45 MELGRKVVWFSAVLIILMGIYVKKGEGQLVENFYKSSCPNVEQIVRQAVQNKLSQTSITIPATLRLFFHDCFVEGCDASVMISSPGGGAEKDAQDNLSLAGDGFDTVVKAKQAVEAACPGRVSCADILALAARDAVVLAGGPNYNVELGRRDGLISKASSVDGNLPSPNFDLNSLTSMFARHGLSQTDMIALSGAHTIGASHCNRFSDRLFSSSGVDPSLNPAYAEQLKQACPRNVDPSVVVKLDPTTPDTFDNVYYRNLMNGKGLFRSDEVLFTNSASKGTVVGFANNGGQFNAAFVEAMRKLGRVGVKTGRAGEIRKDCSAFN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4580677 4583822 + Lsi03G004000.1 Lsi03g00400 658150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00400 325 Gene3D - 32 325 - -
Lsi03g00400 325 PANTHER PEROXIDASE 13 325 - -
Lsi03g00400 325 Gene3D Peroxidase, domain 2 166 304 - -
Lsi03g00400 325 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Lsi03g00400 325 PRINTS Plant peroxidase signature 102 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 ProSiteProfiles Plant heme peroxidase family profile. 28 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 PANTHER - 13 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 SUPERFAMILY Heme-dependent peroxidases 28 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 Pfam Peroxidase 45 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00400 325 CDD secretory_peroxidase 28 324 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00400 Lsi-Chr3:4580677 Lsi04g02192 Lsi-Chr4:28971877 1.38E-128 dispersed
Lsi07g00158 Lsi-Chr7:1675398 Lsi03g00400 Lsi-Chr3:4580677 1.28E-39 dispersed
Lsi03g00399 Lsi-Chr3:4574066 Lsi03g00400 Lsi-Chr3:4580677 3.29E-135 tandem
Lsi03g00400 Lsi-Chr3:4580677 Lsi03g00401 Lsi-Chr3:4590150 5.39E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00400 K00430 - csv:101213343 555.058