Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00401 ATGGGATTGCTTTTTTGGAGGGGTTTGATTTTGGCGGTGGTTGTTGTGGCGGCGACGGTGGAGAGAAGGGAGGCGCAATTAGTAGAAAATTTCTATGGCTCAAGTTGCCCAAACTTAGAGCAAATAGTTACACAATCTGTTCAGACCAAGTTTGCTCAAACTTTTGTTACCATTCCGGCAACTTTGCGACTCTTCTTCCATGATTGCTTCGTTGAGGGATGTGACGCTTCAGTGATGATAGCATCTCCGAATGGGGATGCAGAGAAAGACGCTAAAGACAATCTTTCATTAGCAGGAGATGGATTTGACACTGTTGTTAAAGCAAAACAAGTGGTTGAAAATGTTTGTCCTGGTGTTGTCTCCTGTGCTGACATCTTAGCTCTTGCAACTAGAGATGTCGTTAACTTGGCCGGAGGTCCACAATACAGTGTAGAACTCGGACGTCGAGATGGCCTAATTTCCCAAGCATCTCGAGTGGCTGGAAATCTACCGGAACCATTCTTCAATCTAGACCAACTGACCACCATGTTCGCCGCTCACAATCTGACCCTAATCGACATGATTGCCCTTTCTGGAGCCCATACCCTTGGCTTCTCCCACTGCGACCGTTTTGCCAACCGCCTTTACTCGTTTTCCCCTTCGTCTCCAGTGGACCCATCATTGGACCCTGGCTACGCTCGACAACTAATGGATGCTTGTCCGCAAAATGTGGATCCTAGTGTGGCCATAAACATGGATCCTATAACCCCTCAAACATTTGACAACGTTTACTACCAAAACCTTGTCGCTGGCAAGGGGCTCTTCACTGCGGACCAAATTCTATTCACCGAGTCGGAATCGCAGCCGACAGTTCTTAGCTTTTCCACCAATGGAGCGGAGTTTAATGCAGCGTTTATCACAGCTATGACCAAGTTGGGTCGGGTCGGGGTTAAGACGGGTAATGATGGTGAAATTCGAAGGGATTGCACTGCCTTTAATTCTTAA 984 47.36 MGLLFWRGLILAVVVVAATVERREAQLVENFYGSSCPNLEQIVTQSVQTKFAQTFVTIPATLRLFFHDCFVEGCDASVMIASPNGDAEKDAKDNLSLAGDGFDTVVKAKQVVENVCPGVVSCADILALATRDVVNLAGGPQYSVELGRRDGLISQASRVAGNLPEPFFNLDQLTTMFAAHNLTLIDMIALSGAHTLGFSHCDRFANRLYSFSPSSPVDPSLDPGYARQLMDACPQNVDPSVAINMDPITPQTFDNVYYQNLVAGKGLFTADQILFTESESQPTVLSFSTNGAEFNAAFITAMTKLGRVGVKTGNDGEIRRDCTAFNS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4590150 4592645 + Lsi03G004010.1 Lsi03g00401 658151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00401 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Lsi03g00401 327 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PANTHER PEROXIDASE 10 327 - -
Lsi03g00401 327 Gene3D - 30 326 - -
Lsi03g00401 327 Gene3D Peroxidase, domain 2 164 305 - -
Lsi03g00401 327 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601|GO:0042744
Lsi03g00401 327 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 Pfam Peroxidase 45 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi03g00401 327 PANTHER - 10 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00911 Lsi-Chr1:7369170 Lsi03g00401 Lsi-Chr3:4590150 6.31E-148 dispersed
Lsi02g00787 Lsi-Chr2:7263913 Lsi03g00401 Lsi-Chr3:4590150 3.47E-92 dispersed
Lsi03g00399 Lsi-Chr3:4574066 Lsi03g00401 Lsi-Chr3:4590150 8.02E-141 dispersed
Lsi03g00401 Lsi-Chr3:4590150 Lsi04g02192 Lsi-Chr4:28971877 4.41E-131 dispersed
Lsi03g00400 Lsi-Chr3:4580677 Lsi03g00401 Lsi-Chr3:4590150 5.39E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00401 K00430 - csv:101213580 591.652