Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00401 | ATGGGATTGCTTTTTTGGAGGGGTTTGATTTTGGCGGTGGTTGTTGTGGCGGCGACGGTGGAGAGAAGGGAGGCGCAATTAGTAGAAAATTTCTATGGCTCAAGTTGCCCAAACTTAGAGCAAATAGTTACACAATCTGTTCAGACCAAGTTTGCTCAAACTTTTGTTACCATTCCGGCAACTTTGCGACTCTTCTTCCATGATTGCTTCGTTGAGGGATGTGACGCTTCAGTGATGATAGCATCTCCGAATGGGGATGCAGAGAAAGACGCTAAAGACAATCTTTCATTAGCAGGAGATGGATTTGACACTGTTGTTAAAGCAAAACAAGTGGTTGAAAATGTTTGTCCTGGTGTTGTCTCCTGTGCTGACATCTTAGCTCTTGCAACTAGAGATGTCGTTAACTTGGCCGGAGGTCCACAATACAGTGTAGAACTCGGACGTCGAGATGGCCTAATTTCCCAAGCATCTCGAGTGGCTGGAAATCTACCGGAACCATTCTTCAATCTAGACCAACTGACCACCATGTTCGCCGCTCACAATCTGACCCTAATCGACATGATTGCCCTTTCTGGAGCCCATACCCTTGGCTTCTCCCACTGCGACCGTTTTGCCAACCGCCTTTACTCGTTTTCCCCTTCGTCTCCAGTGGACCCATCATTGGACCCTGGCTACGCTCGACAACTAATGGATGCTTGTCCGCAAAATGTGGATCCTAGTGTGGCCATAAACATGGATCCTATAACCCCTCAAACATTTGACAACGTTTACTACCAAAACCTTGTCGCTGGCAAGGGGCTCTTCACTGCGGACCAAATTCTATTCACCGAGTCGGAATCGCAGCCGACAGTTCTTAGCTTTTCCACCAATGGAGCGGAGTTTAATGCAGCGTTTATCACAGCTATGACCAAGTTGGGTCGGGTCGGGGTTAAGACGGGTAATGATGGTGAAATTCGAAGGGATTGCACTGCCTTTAATTCTTAA | 984 | 47.36 | MGLLFWRGLILAVVVVAATVERREAQLVENFYGSSCPNLEQIVTQSVQTKFAQTFVTIPATLRLFFHDCFVEGCDASVMIASPNGDAEKDAKDNLSLAGDGFDTVVKAKQVVENVCPGVVSCADILALATRDVVNLAGGPQYSVELGRRDGLISQASRVAGNLPEPFFNLDQLTTMFAAHNLTLIDMIALSGAHTLGFSHCDRFANRLYSFSPSSPVDPSLDPGYARQLMDACPQNVDPSVAINMDPITPQTFDNVYYQNLVAGKGLFTADQILFTESESQPTVLSFSTNGAEFNAAFITAMTKLGRVGVKTGNDGEIRRDCTAFNS | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4590150 | 4592645 | + | Lsi03G004010.1 | Lsi03g00401 | 658151 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00401 | 327 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 186 | 196 | IPR019793 | - | |
Lsi03g00401 | 327 | ProSiteProfiles | Plant heme peroxidase family profile. | 26 | 326 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PANTHER | PEROXIDASE | 10 | 327 | - | - | |
Lsi03g00401 | 327 | Gene3D | - | 30 | 326 | - | - | |
Lsi03g00401 | 327 | Gene3D | Peroxidase, domain 2 | 164 | 305 | - | - | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 138 | 153 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 244 | 259 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 100 | 113 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 185 | 197 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 60 | 80 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 300 | 313 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 260 | 277 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 36 | 55 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Plant peroxidase signature | 119 | 129 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | CDD | secretory_peroxidase | 26 | 325 | IPR033905 | GO:0004601|GO:0042744 | |
Lsi03g00401 | 327 | PRINTS | Haem peroxidase superfamily signature | 246 | 261 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Haem peroxidase superfamily signature | 138 | 150 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Haem peroxidase superfamily signature | 58 | 72 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Haem peroxidase superfamily signature | 120 | 137 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PRINTS | Haem peroxidase superfamily signature | 186 | 201 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | Pfam | Peroxidase | 45 | 289 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | SUPERFAMILY | Heme-dependent peroxidases | 26 | 326 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi03g00401 | 327 | PANTHER | - | 10 | 327 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00911 | Lsi-Chr1:7369170 | Lsi03g00401 | Lsi-Chr3:4590150 | 6.31E-148 | dispersed | |
Lsi02g00787 | Lsi-Chr2:7263913 | Lsi03g00401 | Lsi-Chr3:4590150 | 3.47E-92 | dispersed | |
Lsi03g00399 | Lsi-Chr3:4574066 | Lsi03g00401 | Lsi-Chr3:4590150 | 8.02E-141 | dispersed | |
Lsi03g00401 | Lsi-Chr3:4590150 | Lsi04g02192 | Lsi-Chr4:28971877 | 4.41E-131 | dispersed | |
Lsi03g00400 | Lsi-Chr3:4580677 | Lsi03g00401 | Lsi-Chr3:4590150 | 5.39E-165 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00401 | K00430 | - | csv:101213580 | 591.652 |