Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00402 | ATGGGTCGGTGGAATGAGAAGCTTGTAGCCTTTTTTAACAATAGATGGTTGGTTTTTGTGGCTGCAATATGGCTTCAATCTTGTGCTGGAATTGGGTATCTTTTTGGAAGCATATCGCCAATCATCAAAACCAATTTGAGTTACAATCAGAGGCAAATTGCGCGTCTCGGTGTCGCGAAAGACCTTGGCGATAGCGTCGGCATTTTGGCCGCAACCTTGTCGGATATATTGCCCTTTTGGGGAAGTCTCTTGGTCGGTGCTATCAATAACTTTGTTGGGTATGGTTGGCTTTGGCTCATCGTCACTGGTCGAGCTCCCGTTTTGCCTCTCTGGGCTATGTTTCCAATGAGATATCCATATTCAGATCTTGATTGGATGGTTTCTGGTGGAGGTGTTTTACTTTTGCGAACTAATTTCAAAAGTTGCATAGTGGTCAACGAATTGGAATCTGTTGTTGGCCTCAAAAGTGCATCTGGGGATATGTGCGTTCTTGTATTTGTGGGAACGAATGGGGAGACGTACTTCAATACAGTTTCTCTGGTTTCTTGCGTACAAAACTTTCCGAAAAGCAGGGGCCCTGTGGTTGGGATTCTGAAAGGCTTTGCTGGTTTAAGTGGTGCAATTTTGACTCAGATATATGCAATCATGCATTCTCCTGATTCAGCCAATCTTATATTCATGATTGCAGTAGGTCCTGCACTGGTGGCTATTGGTATGATGTTTTTTATTAGACCTGTCGCCGGTCATAGACAAGTAAGGCCGTCCGATGGCATGAGCTTTACAAGTGTTTATGGTGTCTGCCTCCTTTTGGCTGCTTATTTGATGGGAGTCATGCTTGTTGAGGATCTTGTTACCTTGAGCCCCACTGTGATAGCCATTTTCACTGCGATTATGTTTGTCATCCTTCTTACACCCTTTTTGATTCCTGTGACATTGACTTTTAGCTCGGAGACGACAACATATGCTGAGCAAGAGGCTCTCCTACCACCGTCAGAGAAGGAGGAACCTGCTAGAGCTGAACCAGATGGTAATGAAGTGATATTTAGTGAGGTGGAAGACGAAAAATCAGAGGGAGAGGACTTACTTCCTGCATCAGAGAGACAAAAACGCATTGCTCAGTTGCAAACAAAACTATTGCAAGCAGCTGCAGAAGGAGCAGTAAGAGTCAAGAGGAGGAAGGGTCCACGTAGAGGGGAAGACTTCACTTTGGGTCAAGCTTTAATCAAAGCAGACTTCTGGCTTATATTTTTCTCCCTTCTCCTTGGTTCTGGAACTGGATTGACCGTGATCGATAACCTCGGACAGATGAGCCAGTCTTTAGGTTATGATAATACACATATTTTCGTATCCCTGATCAGCATATGGAACTTTCTCGGTCGTGTTGGTGGTGGATACCTCTCTGAGATTGTTGTGAGAGATTTTGCTTATCCAAGACCCCTTGCAATGGCGATCGCGCAATTCCTTATGATATTTGGACATGTCTTCATCGGTATGGGATGGCCTGGGGCAATGTACATCGGTACTCTCATAACGGGGCTTGGGTACGGGGCTCACTGGGCAATTGTGCCTGCTACTGCCTCTGAATTGTTTGGCTTGAAAAAGTTTGGGGCTTTATACAACTTCATTACTCTGTCAACTCCTATGGGATCTCTGATATTTTCTGGCTTAATCGCGAGCAGTATATATGATAGTGAAGCAGAGAAGCAAGCTCATAATCATCTCCTCCCACAGGTGCAGAGCTCCTCGTCATTTTGGTTCAGCAGACTTAATGCTGATGGACCGCACAAGTGCGTGGGTGCCATATGTTTCTTTTTAACTTGTATGATAATGGCTGGATTCTGTGCGGTTGCAGGCATGTTAAGTTTAATTTTGGTGCACCGGACGAAGGGTGTTTACTACAACCTCTATGGAAAATCTCGTACATCGTCGCTTTCGTAG | 1938 | 44.89 | MGRWNEKLVAFFNNRWLVFVAAIWLQSCAGIGYLFGSISPIIKTNLSYNQRQIARLGVAKDLGDSVGILAATLSDILPFWGSLLVGAINNFVGYGWLWLIVTGRAPVLPLWAMFPMRYPYSDLDWMVSGGGVLLLRTNFKSCIVVNELESVVGLKSASGDMCVLVFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAIMHSPDSANLIFMIAVGPALVAIGMMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLVEDLVTLSPTVIAIFTAIMFVILLTPFLIPVTLTFSSETTTYAEQEALLPPSEKEEPARAEPDGNEVIFSEVEDEKSEGEDLLPASERQKRIAQLQTKLLQAAAEGAVRVKRRKGPRRGEDFTLGQALIKADFWLIFFSLLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYLSEIVVRDFAYPRPLAMAIAQFLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWAIVPATASELFGLKKFGALYNFITLSTPMGSLIFSGLIASSIYDSEAEKQAHNHLLPQVQSSSSFWFSRLNADGPHKCVGAICFFLTCMIMAGFCAVAGMLSLILVHRTKGVYYNLYGKSRTSSLS | 645 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 4595550 | 4599186 | - | Lsi03G004020.1 | Lsi03g00402 | 658152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00402 | 645 | Pfam | Nodulin-like | 15 | 114 | IPR010658 | - | |
Lsi03g00402 | 645 | Pfam | Nodulin-like | 160 | 310 | IPR010658 | - | |
Lsi03g00402 | 645 | SUPERFAMILY | MFS general substrate transporter | 8 | 246 | IPR036259 | - | |
Lsi03g00402 | 645 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 28 | - | - | |
Lsi03g00402 | 645 | MobiDBLite | consensus disorder prediction | 326 | 345 | - | - | |
Lsi03g00402 | 645 | CDD | MFS_Mch1p_like | 15 | 617 | - | - | |
Lsi03g00402 | 645 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 3 | 113 | - | - | |
Lsi03g00402 | 645 | PANTHER | PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE | 161 | 641 | - | - | |
Lsi03g00402 | 645 | SUPERFAMILY | MFS general substrate transporter | 260 | 630 | IPR036259 | - | |
Lsi03g00402 | 645 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 161 | 641 | - | - | |
Lsi03g00402 | 645 | PANTHER | UNCHARACTERIZED NODULIN-LIKE PROTEIN | 3 | 113 | - | - | |
Lsi03g00402 | 645 | Gene3D | MFS general substrate transporter like domains | 408 | 631 | IPR036259 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00402 | Lsi-Chr3:4595550 | Lsi07g00429 | Lsi-Chr7:4591177 | 1.75E-108 | dispersed | |
Lsi03g00402 | Lsi-Chr3:4595550 | Lsi10g00482 | Lsi-Chr10:6946048 | 2.51E-94 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00402 | - | - | csv:101211655 | 1050.81 |