Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00402 ATGGGTCGGTGGAATGAGAAGCTTGTAGCCTTTTTTAACAATAGATGGTTGGTTTTTGTGGCTGCAATATGGCTTCAATCTTGTGCTGGAATTGGGTATCTTTTTGGAAGCATATCGCCAATCATCAAAACCAATTTGAGTTACAATCAGAGGCAAATTGCGCGTCTCGGTGTCGCGAAAGACCTTGGCGATAGCGTCGGCATTTTGGCCGCAACCTTGTCGGATATATTGCCCTTTTGGGGAAGTCTCTTGGTCGGTGCTATCAATAACTTTGTTGGGTATGGTTGGCTTTGGCTCATCGTCACTGGTCGAGCTCCCGTTTTGCCTCTCTGGGCTATGTTTCCAATGAGATATCCATATTCAGATCTTGATTGGATGGTTTCTGGTGGAGGTGTTTTACTTTTGCGAACTAATTTCAAAAGTTGCATAGTGGTCAACGAATTGGAATCTGTTGTTGGCCTCAAAAGTGCATCTGGGGATATGTGCGTTCTTGTATTTGTGGGAACGAATGGGGAGACGTACTTCAATACAGTTTCTCTGGTTTCTTGCGTACAAAACTTTCCGAAAAGCAGGGGCCCTGTGGTTGGGATTCTGAAAGGCTTTGCTGGTTTAAGTGGTGCAATTTTGACTCAGATATATGCAATCATGCATTCTCCTGATTCAGCCAATCTTATATTCATGATTGCAGTAGGTCCTGCACTGGTGGCTATTGGTATGATGTTTTTTATTAGACCTGTCGCCGGTCATAGACAAGTAAGGCCGTCCGATGGCATGAGCTTTACAAGTGTTTATGGTGTCTGCCTCCTTTTGGCTGCTTATTTGATGGGAGTCATGCTTGTTGAGGATCTTGTTACCTTGAGCCCCACTGTGATAGCCATTTTCACTGCGATTATGTTTGTCATCCTTCTTACACCCTTTTTGATTCCTGTGACATTGACTTTTAGCTCGGAGACGACAACATATGCTGAGCAAGAGGCTCTCCTACCACCGTCAGAGAAGGAGGAACCTGCTAGAGCTGAACCAGATGGTAATGAAGTGATATTTAGTGAGGTGGAAGACGAAAAATCAGAGGGAGAGGACTTACTTCCTGCATCAGAGAGACAAAAACGCATTGCTCAGTTGCAAACAAAACTATTGCAAGCAGCTGCAGAAGGAGCAGTAAGAGTCAAGAGGAGGAAGGGTCCACGTAGAGGGGAAGACTTCACTTTGGGTCAAGCTTTAATCAAAGCAGACTTCTGGCTTATATTTTTCTCCCTTCTCCTTGGTTCTGGAACTGGATTGACCGTGATCGATAACCTCGGACAGATGAGCCAGTCTTTAGGTTATGATAATACACATATTTTCGTATCCCTGATCAGCATATGGAACTTTCTCGGTCGTGTTGGTGGTGGATACCTCTCTGAGATTGTTGTGAGAGATTTTGCTTATCCAAGACCCCTTGCAATGGCGATCGCGCAATTCCTTATGATATTTGGACATGTCTTCATCGGTATGGGATGGCCTGGGGCAATGTACATCGGTACTCTCATAACGGGGCTTGGGTACGGGGCTCACTGGGCAATTGTGCCTGCTACTGCCTCTGAATTGTTTGGCTTGAAAAAGTTTGGGGCTTTATACAACTTCATTACTCTGTCAACTCCTATGGGATCTCTGATATTTTCTGGCTTAATCGCGAGCAGTATATATGATAGTGAAGCAGAGAAGCAAGCTCATAATCATCTCCTCCCACAGGTGCAGAGCTCCTCGTCATTTTGGTTCAGCAGACTTAATGCTGATGGACCGCACAAGTGCGTGGGTGCCATATGTTTCTTTTTAACTTGTATGATAATGGCTGGATTCTGTGCGGTTGCAGGCATGTTAAGTTTAATTTTGGTGCACCGGACGAAGGGTGTTTACTACAACCTCTATGGAAAATCTCGTACATCGTCGCTTTCGTAG 1938 44.89 MGRWNEKLVAFFNNRWLVFVAAIWLQSCAGIGYLFGSISPIIKTNLSYNQRQIARLGVAKDLGDSVGILAATLSDILPFWGSLLVGAINNFVGYGWLWLIVTGRAPVLPLWAMFPMRYPYSDLDWMVSGGGVLLLRTNFKSCIVVNELESVVGLKSASGDMCVLVFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYAIMHSPDSANLIFMIAVGPALVAIGMMFFIRPVAGHRQVRPSDGMSFTSVYGVCLLLAAYLMGVMLVEDLVTLSPTVIAIFTAIMFVILLTPFLIPVTLTFSSETTTYAEQEALLPPSEKEEPARAEPDGNEVIFSEVEDEKSEGEDLLPASERQKRIAQLQTKLLQAAAEGAVRVKRRKGPRRGEDFTLGQALIKADFWLIFFSLLLGSGTGLTVIDNLGQMSQSLGYDNTHIFVSLISIWNFLGRVGGGYLSEIVVRDFAYPRPLAMAIAQFLMIFGHVFIGMGWPGAMYIGTLITGLGYGAHWAIVPATASELFGLKKFGALYNFITLSTPMGSLIFSGLIASSIYDSEAEKQAHNHLLPQVQSSSSFWFSRLNADGPHKCVGAICFFLTCMIMAGFCAVAGMLSLILVHRTKGVYYNLYGKSRTSSLS 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4595550 4599186 - Lsi03G004020.1 Lsi03g00402 658152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00402 645 Pfam Nodulin-like 15 114 IPR010658 -
Lsi03g00402 645 Pfam Nodulin-like 160 310 IPR010658 -
Lsi03g00402 645 SUPERFAMILY MFS general substrate transporter 8 246 IPR036259 -
Lsi03g00402 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Lsi03g00402 645 MobiDBLite consensus disorder prediction 326 345 - -
Lsi03g00402 645 CDD MFS_Mch1p_like 15 617 - -
Lsi03g00402 645 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 3 113 - -
Lsi03g00402 645 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 161 641 - -
Lsi03g00402 645 SUPERFAMILY MFS general substrate transporter 260 630 IPR036259 -
Lsi03g00402 645 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 161 641 - -
Lsi03g00402 645 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 3 113 - -
Lsi03g00402 645 Gene3D MFS general substrate transporter like domains 408 631 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00402 Lsi-Chr3:4595550 Lsi07g00429 Lsi-Chr7:4591177 1.75E-108 dispersed
Lsi03g00402 Lsi-Chr3:4595550 Lsi10g00482 Lsi-Chr10:6946048 2.51E-94 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00402 - - csv:101211655 1050.81