Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00408 ATGGATAATAATTACCAAATCTTCTTCCCAGATTCCTCCTCCTCTCATAATTCACAGCCTACTACGCCCATGGATCATGATCAGTTCGAAGAAGAAGAAGATCAAGAAGAAGAAGAAAGTAGTGTGAAGAAAACAAGTGGATCAGGGAAATCGAAGAATGAGAAGATAAGGAAAGGAAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACAACAAGTTTCCCAGGAGCTATTACAAGTGTTCACATCAAGGATGCAAAGTGAAGAAACAAATTCAACGGCTTACAAATGACGAAGGAGTGGTACAAACAACCTACGAAGGAGTTCATTCCCATCCCATTGAAAAGCCTCAAGATAACTTTCAACATATCTTGACCCACATGCAAATCTACCCTTCTTCCTTTTAA 459 40.09 MDNNYQIFFPDSSSSHNSQPTTPMDHDQFEEEEDQEEEESSVKKTSGSGKSKNEKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNNKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVQTTYEGVHSHPIEKPQDNFQHILTHMQIYPSSF 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4656714 4658408 - Lsi03G004080.1 Lsi03g00408 658158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00408 152 MobiDBLite consensus disorder prediction 1 24 - -
Lsi03g00408 152 MobiDBLite consensus disorder prediction 1 56 - -
Lsi03g00408 152 PANTHER WRKY TRANSCRIPTION FACTOR 75-RELATED 15 148 - -
Lsi03g00408 152 ProSiteProfiles WRKY domain profile. 67 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00408 152 SMART WRKY_cls 72 131 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00408 152 Pfam WRKY DNA -binding domain 73 130 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi03g00408 152 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 148 IPR044810 GO:0003700
Lsi03g00408 152 Gene3D WRKY domain 57 132 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi03g00408 152 MobiDBLite consensus disorder prediction 39 56 - -
Lsi03g00408 152 SUPERFAMILY WRKY DNA-binding domain 65 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00408 Lsi-Chr3:4656714 Lsi07g01483 Lsi-Chr7:21620276 4.80E-55 dispersed
Lsi03g00408 Lsi-Chr3:4656714 Lsi11g01628 Lsi-Chr11:24630520 6.39E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24968 PF03106 WRKY 1.40E-25 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00408 - - csv:101212622 214.927