Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00412 ATGGATAATCGGAATGTTGTCGTCTGCGACAATGGCACTGGGTATGTAAAATGTGGATTTGCCGGGGAGAATTTTCCCACTTCTGTGTTTCCTTGTGTGGTGGGAAGACCGCTGCTTCGCTATGAAGAATCACTCATCGAACAGGAGTTGAAGGATATTGTTGTTGGAGAAAGTTGTGCAGATTTGCGCCATCAGCTTGATATAACTTATCCAGTTCATAATGGTATCGTTCAAAATTGGGATGATATGTGTCATGTTGAGACCATGTTTGAGAAGTACAACTTTTCTGGGGTTTTCATTCAAATCCAAGCAGTTTTAACTTTGTATGCTCAAGGTTTACTGACTGGGTTAGTCATTGACTCTGGTGATGGTGTCACTCATGTGGTTCCAGTTGTTGATGGTTACTCATTTCCCCATCTTACAAAAAGAATGAATGTAGCTGGGCGGCACATTACTTCATATCTTGTTGATTTACTCTCACGGAGAGGGTATGCTATGAATAGGTCTGCTGATTTTGAGACTGTTAGGGAAATCAAGGAGAAGTTATGCTATATAAGTTATGATTACAAGAGGGAATATCAACTGGGGCTTGAGACCACCATTCTTGTCAAGAACTACACTTTTGTTGTTTTGGTAATCTTTTTACTTGATTTTGGTCTCACTGAGAATTATTTGTTACTTTTATGTTATTTTAATTTCACTTGGATGAGTTACTTTGATCAGCTTCCAGATGGAAGGGTGATCAAAGTTGGCACTGAACGTTTTCAAGCTCCTGAAGCACTCTTTACTCCAGAACTGATAGATGTTGAAGGGGATGGCATGGCAGATATGGTTTTTCGTTGCATACAAGAAATGGATATTGATAACCGGATGATGCTTTACCAGCATATCGTTTTAAGTGGTGGGAGCACAATGTATCCAGGATTACCTAGTCGTTTGGAGAAAGAAATACTTGACCGCTATCTCGAAGTCGTCTTGAAGGGAAACAGAGATGGTTTAAAGAAACTGAGATTGCGCATAGAGGATCCACCAAGAAGAAAGCACATGGTGTATCTGGGAGGTGCGGTTCTAGCAGGAATAATGAAGGATGCACCTGAATTTTGGATCAGCAGGGAAGATTATCTAGAAGAAGGTGTTGCTTGTCTAAGCAAATGTGGCCAGGCATGA 1167 40.79 MDNRNVVVCDNGTGYVKCGFAGENFPTSVFPCVVGRPLLRYEESLIEQELKDIVVGESCADLRHQLDITYPVHNGIVQNWDDMCHVETMFEKYNFSGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITSYLVDLLSRRGYAMNRSADFETVREIKEKLCYISYDYKREYQLGLETTILVKNYTFVVLVIFLLDFGLTENYLLLLCYFNFTWMSYFDQLPDGRVIKVGTERFQAPEALFTPELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEILDRYLEVVLKGNRDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISREDYLEEGVACLSKCGQA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4697435 4704629 + Lsi03G004120.1 Lsi03g00412 658162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00412 388 Gene3D - 272 349 - -
Lsi03g00412 388 PANTHER ACTIN-RELATED PROTEIN 2 1 86 - -
Lsi03g00412 388 PANTHER ACTIN-RELATED PROTEIN 2 241 385 - -
Lsi03g00412 388 PANTHER ACTIN-RELATED PROTEIN 2 86 208 - -
Lsi03g00412 388 Gene3D Actin; Chain A, domain 4 148 207 - -
Lsi03g00412 388 Gene3D Actin; Chain A, domain 4 241 271 - -
Lsi03g00412 388 Gene3D - 350 379 - -
Lsi03g00412 388 CDD NBD_sugar-kinase_HSP70_actin 7 155 - -
Lsi03g00412 388 Gene3D - 86 100 - -
Lsi03g00412 388 SMART actin_3 4 386 IPR004000 -
Lsi03g00412 388 PANTHER ACTIN 241 385 IPR004000 -
Lsi03g00412 388 PANTHER ACTIN 86 208 IPR004000 -
Lsi03g00412 388 Gene3D - 2 85 - -
Lsi03g00412 388 SUPERFAMILY Actin-like ATPase domain 112 382 IPR043129 -
Lsi03g00412 388 PRINTS Actin signature 25 34 IPR004000 -
Lsi03g00412 388 PRINTS Actin signature 236 252 IPR004000 -
Lsi03g00412 388 PRINTS Actin signature 62 84 IPR004000 -
Lsi03g00412 388 SUPERFAMILY Actin-like ATPase domain 2 119 IPR043129 -
Lsi03g00412 388 Pfam Actin 2 84 IPR004000 -
Lsi03g00412 388 Pfam Actin 86 382 IPR004000 -
Lsi03g00412 388 PANTHER ACTIN 1 86 IPR004000 -
Lsi03g00412 388 Gene3D - 102 147 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00412 Lsi04g00880 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00412 Lsi-Chr3:4697435 Lsi04g00880 Lsi-Chr4:8665301 7.84E-89 dispersed
Lsi03g00412 Lsi-Chr3:4697435 Lsi10g00709 Lsi-Chr10:9906107 7.84E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00412 K17260 - csv:101213341 684.871