Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00413 ATGATCAATTCTCTCTGTGGAAGCATTGGATCAAGCAAGACTACTACTGATAACAACTCCTCAGCTTGCACCACCAAGCAACACCTTCCTCAGCCTACTTCCCCTAACGAATCCGTTTCCGCAAAGACCACACCGATATCATCCTCCGATTTGGACCAAACCGCCCTCACGCCACCTAGCCTTGACTTCCCCGCTCCCAAATTCGAGATCGATGGCGATATCGAGATTCAATCGCCCGACAACTCGGTATGGGAATCCTTGTTTGCAGACCAACTCGACTGCGATTTCATGATCTCGTCCCCCTCTCGGAGCTTGTCGTCGCCTCAAAGCTTGAATTTCAACTACTATAACTACAACTATGGGCAAACAATAATGCAATGTTCTCCACCAAGGAGTTGCTCTCAAGTTGGAGCTTCAAGTAGTGTCCAAAAAGGAAAAGGGCTTAGCCCACTTCACAAGGTCTTTAATTCTCCAAGCAATCAATATATGCAAGCAATAGAGGGAAGTTCTTCTTCAATACCAACTATTGGAGAATTGTTGGAAGATTATCAAGAAGATGGATTTGAAACATATCAAAACATGGCCAAGATTTCAGGTATTGGAGAATCATTGCAATATTATGATATATCAACTTCTTCTCTTCCACCCATTGTTTTTGAGGACTTGGCTCTTCCAAATTCTTCAAATATTATTTGTGCCTCAAATCAAGAATCATCAACACTGGAGAGGGAATTCTATAATCAAATAGGCTCCAATATTAAAACTGCCTCATTGCCACAACAACAAGAAGATGATCAAGATCAACAACGGAATCCGACGCAGCTGCCGCCACGACCGACGCCACCGCTACCGCCACTGCCAAAACAGCCTCAAAGTCAGCTCAACCATAGCTTGATGGCGCCTCTTCCTGTTGGATCTGAGCAGGAACAAGATAGTGGACTTCAACTGGTGCACCTCCTTCTTGCATGTGCAGAAGCAGTAGCAAAAGAAGATTACATGTTAGCTAGACGATATCTTCATCATCTCAACAGAGTTGTAACTCCAATTGGTGATTCCATGCAAAGAGTTGCTTCTTGTTTCACCGAAGCCTTGACTGCTCGTCTTGCTGCCACTCTCACCACTGCAAAACCCTCTTCTTCAATCCCTCCATTTCCTCAAAACTCCCTTGAAATCCTCAAGATTTATCAAATTGTTTATCAAGCTTGTCCTTATGTCAAATTTGCTCATTTCACCGCTAATCAAGCCATTTTTGAAGCTTTTGAAGCTGAAGAACGTGTCCATGTTATTGACCTTGATATTCTCCAAGGCTATCAATGGCCAGCTTTCATGCAAGCCCTAGCAGCTCGCCCGGGAGGCTCCCCCTTCCTCCGAATCACCGGTGTTGGCCCTGTCATAGACGCCGTACGAGAAACCGGCCGTTGCTTAACCGAGCTAGCTCATTCTCTCAACGTTCCTTTCGAATTCCATGCCATCGGCGAGCAACTTGAAGCCCTAAAGCCAAACATGTTTAACCGTCGCGTCGGTGAGGCTCTAGCGGTCAATGCCGTAAACCGTCTTCACCGTGTCCCCGGGAAGAGCCTTGGGAACTTACTAGGAATGATCCGAGATCAGGCTCCGAATATCGTAACCCTAGTTGAACAAGAAGCAAGCCATAACGGACCGTACTTCTTGGGGAGGTTCCTCGAAGCCCTACACTATTACTCCGCCATTTTCGACTCGCTCGATGCGACGTTTCCACCGGATTCGGCGCAACGGGCGAAGGTGGAGCAGTATATATTTGCGCCGGAGATAAGAAATATAGTGGCGTGTGAGGGACCGGAGCGAATCGAACGACACGAGAGGCTGGACAAATGGAGGAAATTAATGGAAGCAAAGGGATTTAAAGGAGTGGCATTGAGTAGTAATGCAGTAACACAGTCCAAAATATTGCTTGGTTTGTATTCATGTGATGGATACAGGTTGACTGAGGACAAAGGATGCTTGTTGTTGGGGTGGCAAGATAGGGCTCTTATTGCAGCATCTGCATGGAGATGCTGA 2037 46.39 MINSLCGSIGSSKTTTDNNSSACTTKQHLPQPTSPNESVSAKTTPISSSDLDQTALTPPSLDFPAPKFEIDGDIEIQSPDNSVWESLFADQLDCDFMISSPSRSLSSPQSLNFNYYNYNYGQTIMQCSPPRSCSQVGASSSVQKGKGLSPLHKVFNSPSNQYMQAIEGSSSSIPTIGELLEDYQEDGFETYQNMAKISGIGESLQYYDISTSSLPPIVFEDLALPNSSNIICASNQESSTLEREFYNQIGSNIKTASLPQQQEDDQDQQRNPTQLPPRPTPPLPPLPKQPQSQLNHSLMAPLPVGSEQEQDSGLQLVHLLLACAEAVAKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALTARLAATLTTAKPSSSIPPFPQNSLEILKIYQIVYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGSPFLRITGVGPVIDAVRETGRCLTELAHSLNVPFEFHAIGEQLEALKPNMFNRRVGEALAVNAVNRLHRVPGKSLGNLLGMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRNIVACEGPERIERHERLDKWRKLMEAKGFKGVALSSNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRALIAASAWRC 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4715972 4718910 + Lsi03G004130.1 Lsi03g00413 658163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00413 678 MobiDBLite consensus disorder prediction 257 273 - -
Lsi03g00413 678 MobiDBLite consensus disorder prediction 1 56 - -
Lsi03g00413 678 MobiDBLite consensus disorder prediction 1 62 - -
Lsi03g00413 678 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 676 IPR005202 -
Lsi03g00413 678 ProSiteProfiles GRAS family profile. 307 677 IPR005202 -
Lsi03g00413 678 Pfam GRAS domain family 316 677 IPR005202 -
Lsi03g00413 678 PANTHER GRAS FAMILY PROTEIN RAM1 20 676 - -
Lsi03g00413 678 MobiDBLite consensus disorder prediction 257 293 - -
Lsi03g00413 678 MobiDBLite consensus disorder prediction 274 289 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi03g00413 Lsi04g00872 CCT
Lsi03g00413 Lsi04g00872 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00413 Lsi-Chr3:4715972 Lsi09g00929 Lsi-Chr9:11528705 9.63E-103 dispersed
Lsi05g00522 Lsi-Chr5:6546210 Lsi03g00413 Lsi-Chr3:4715972 1.21E-80 dispersed
Lsi06g00550 Lsi-Chr6:6937613 Lsi03g00413 Lsi-Chr3:4715972 2.52E-82 dispersed
Lsi07g00202 Lsi-Chr7:2173708 Lsi03g00413 Lsi-Chr3:4715972 2.48E-61 dispersed
Lsi07g01390 Lsi-Chr7:20215979 Lsi03g00413 Lsi-Chr3:4715972 3.30E-75 dispersed
Lsi07g01415 Lsi-Chr7:20682288 Lsi03g00413 Lsi-Chr3:4715972 6.01E-79 dispersed
Lsi08g00416 Lsi-Chr8:11607386 Lsi03g00413 Lsi-Chr3:4715972 1.83E-62 dispersed
Lsi09g01628 Lsi-Chr9:24535021 Lsi03g00413 Lsi-Chr3:4715972 4.99E-40 dispersed
Lsi03g00413 Lsi-Chr3:4715972 Lsi10g00057 Lsi-Chr10:977937 1.63E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24969 PF03514 GRAS 5.70E-133 CL0063 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00413 - - csv:101214064 1200.27