Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00430 ATGCTCACAATAAATTTCTTGTTTCTGTTTCCCACCGTTTTTAACCATCGATGGATTATTTTTTGTTACGCGTTAACTCTTCTTGGACTCGAGTTTGAACTGATATTTCTTGGTCTTGTAAAAATTTGCAGACGAGTCAAGGAAGTCCAAGAAAAAAGTGTTTCAGTTGGAGGAGCATGTTTGGTTGCAACAATTATAGGATGCTGCATCTTTTTATGTTTTCGAAAAAAGAAGAAGCAATATCCAATTAGATCTGTAAGCAAAGAAGCTGGGCCTTCCCCTCCTGTATCTTATCCTATTTCAAACAAAGATTTGCCTCCTGCTCCTCTTTTAAACTCCTTCCAGAGTCAGAGCATTCCTTCTTATCCCTCTTCCAAATCTGATCTTGAGACACCTACCACCAACCATGACATTCAAGTATTCAATTATGATGAACTCGAAAAAGCTACTGATAATTTTAACCGTTCTCGAGAGCTTGGCGATGGAGGATTTGGCACTGTTTACTATGGGAAGCTTGTTGATGGGCGTGAAGTTGCTGTGAAGCGTCTATATGAACATAACTGCAAACGAGTGGAACAGTTCATGAATGAAGTGGACATCCTTGCTCATTTACAACACAAGAACCTTGTCAAACTCTATGGCTGCACCTCCAGATATAGCCAAGGCCTTCTCCTTGTCTATGAATACATTCCCAATGGAACCGTAGCCGACCATCTCCACGGATCACGGGTGAAGTTTGGTTTGCTTAGTTGGCCAATTCGGTTGCGAATCGCCATCGAAACAGCGAATGCACTCATGTACCTCCATCGCTCGGACATCATCCATCGAGACGTCAAAACCAATAACATTCTTCTTGACAACAACTTCACTGTCAAAGTGGCTGATTTTGGCCTTTCAAGGCTGTTCCCTACTGATGTAACTCATGTGTCCACTGCCCCACAAGGCACACCAGGCTATGTTGATCCTGAGTACTACCAATGTTATCAACTCACAACTAAGAGCGACATATACAGCTTTGGAGTGGTTTTGATTGAGCTTATATCGTCGCTAAGAGCAGTCGACACAGATAGGAAACGACAGGATATCAACTTGAGTAATATGGCAGTGAGTAAAATACAAAGTCGGGCATTGAATGAGTTGATCGATCCAAAGCTCGGTTTCAAAGAGAATCATGAAGTTATGAATGCGACAACATCAATTGCAGAGTTGGCTTTTCGCTGCCTTCAACAGGAAAGGGACATGAGGCCTTCAATGGAAGAAGTGGTGGAGGTACTAAGGGAGATTGAGAATGACAAATCCAGTTCTGGGATGGCTAAACTTGTCGATATTGAAGTTGTTGGAGCCGATACCGAGCTCATAAAGAAAACACCACCCTCATTTTCGCCTAATTCTGTCATAGCTGACAACTGGGCTAGCAACTCTACCATCACAAATTCCTTGTGA 1443 42.48 MLTINFLFLFPTVFNHRWIIFCYALTLLGLEFELIFLGLVKICRRVKEVQEKSVSVGGACLVATIIGCCIFLCFRKKKKQYPIRSVSKEAGPSPPVSYPISNKDLPPAPLLNSFQSQSIPSYPSSKSDLETPTTNHDIQVFNYDELEKATDNFNRSRELGDGGFGTVYYGKLVDGREVAVKRLYEHNCKRVEQFMNEVDILAHLQHKNLVKLYGCTSRYSQGLLLVYEYIPNGTVADHLHGSRVKFGLLSWPIRLRIAIETANALMYLHRSDIIHRDVKTNNILLDNNFTVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTTKSDIYSFGVVLIELISSLRAVDTDRKRQDINLSNMAVSKIQSRALNELIDPKLGFKENHEVMNATTSIAELAFRCLQQERDMRPSMEEVVEVLREIENDKSSSGMAKLVDIEVVGADTELIKKTPPSFSPNSVIADNWASNSTITNSL 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4888300 4890994 - Lsi03G004300.1 Lsi03g00430 658180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00430 480 SUPERFAMILY Protein kinase-like (PK-like) 136 429 IPR011009 -
Lsi03g00430 480 SMART serkin_6 153 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00430 480 ProSiteProfiles Protein kinase domain profile. 153 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00430 480 CDD STKc_IRAK 159 428 - -
Lsi03g00430 480 ProSitePatterns Protein kinases ATP-binding region signature. 159 181 IPR017441 GO:0005524
Lsi03g00430 480 Pfam Protein tyrosine and serine/threonine kinase 156 425 IPR001245 GO:0004672|GO:0006468
Lsi03g00430 480 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 51 472 IPR044652 -
Lsi03g00430 480 Gene3D Transferase(Phosphotransferase) domain 1 230 449 - -
Lsi03g00430 480 Gene3D Phosphorylase Kinase; domain 1 124 229 - -
Lsi03g00430 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Lsi03g00430 480 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 51 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00430 Lsi-Chr3:4888300 Lsi07g00689 Lsi-Chr7:7422634 2.29E-168 dispersed
Lsi03g00430 Lsi-Chr3:4888300 Lsi04g00234 Lsi-Chr4:2377209 1.91E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83471 PF07714 PK_Tyr_Ser-Thr 4.00E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00430 - - csv:101215984 743.036