Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00453 ATGAGGCGGCATCGTTTTCACACCCTGTTTAATCTGCCCACTATTTCAGAGCATTCTGTGAGTGAAAGCAGCCTATTAAATAGTATGAGTTCTTCATCAACTCAACTCTGTGCTTCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGCAAATGCATTTGGTAGTCGACTAGATACGAGCATATTGCCTATTATAAAAGAGGATGACTGTGTCGACAACAAACCTGAGTTTGTTCCTTTCGAATCGATGGATCATCTCGAGAGCAGTCAAGAAATGAACAAGCCAATCGACGATAAGGTACAAAGACGTTTAGCACAAAATCGGGAAGCAGCTCGTAAAAGCCGTATGAGGAAGAAGGTTTATGTGCAGCAGTTAGAAACTAGCCGTTTGAAGCTGGTACAGTTGGAGCAGGAGCTAGAAAGAACCAGGCAACAGAAGGGTACCAGCTGCTTAGTAGACACCAGCCACTTCGTATTCCGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGATGGAATACAATCACTGGGTTGAAGAGCAACAGAGACAGATCACCGAACTCAGAAACGCGTTGCAAGTTCATACAACTGAGATAGAACTCCAAATTTTAGTGGAGAGCAGCTTAAACCATTACCATAATCTGTTTGGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCTGGTGTTTGGAGAACATCGGCAGAGCGTTTTTTCCTCTGGATAGGAGGATTTCGGCCATCAGAACTGCTAAACGTTCTCAAGCCGTACTTTGAGCCATTAAATGAACAACAAAGAGCCGATATCCACAAGTTGCAACAGTCGTCTCGGCAAGCTGAAGATGCGCTCACACAGGGAATGGAAAAATTGCACCAGAATCTATCCCTCAGCATTGCCAGTGATCCTATAGGAAGCTATATTTCTCAGATGGGTGATGGAATTGAGAAACTACAAGCATTGGAGAGCTTCGTAAGCCAGAGGATCAAATCTCTAGCCCTTCCTCAAAACCCTCTGTGTGGAAAAATCAAACTGCTCAAGGAGCAATTGGCTTATGCTAATGACTTCTGGATGCAGCGCAAGGCTTGCTTGCTTTGGGCGAGTACTTCCACCGTCTCCGCGTTCTCAGTTCGCTCTGGGCCACTCGACCTCGTGAACCTGCCTAGCCATGAAAAGCTCAGACATGTTCCAGTCACCACCATAATATTCAATACCATAAGGCATAGACTACAAGGAATGTATGCTTCTGCCTCTTATTATAGTGGATGCCAAGCGACCACTCAATATTTCAATGAATCTTGCCTCCAAATTAGAGCTTTGGTGACCAAGTTGAAACCATTTCTATACTCATACAAACCATTTAGACCTTGCAAAAAACAAAATCTGCTTCTTGGAAATGAATCAAACTTGCAGATTTGGCATTTCAAAGAACAGCTGCTAAAAGAAGAAGAAATCAAATCGAAACACAAGGAAAACGATAGAGATCTTCTTGATCGTCGAATTCAGCACTGTGAAGATGCAGAGATCGTGGCAAGTCCTGCACTACCATCCTCTTCCTTTTCGAGCGCAGAGCTGCCGCTTACGGCGGACGGAAAGGTGTTGGAGCTCGACGAATCCAATTTCGATCTCGCCATTTCATCATTTGATTACATATTGGTCGACTTTTACGCCCCATGGTGCGGCCACTGCAAGCGTCTTTCTCCAGAGCGTATTAGAACTCTTAATTGTATATTTCGCCCATATAATTTGATTTCATTCCGGAATCCGGATGGCTGCAGCATCTCCAGATTTACTGTACTAGATGATAGATCCTTCTACTTCATGATCCGGCAAGAGGTGTATAAGAGCTGTCATTTGGTTCAATCTCATTTCCCGCAGTTTCTGTTGGATGCTGCTGCACCTCAGCTTGCCAAATTGAAGGAGCCTGTAGTTCTAGCAAAAGTGAATGCTGACAAGTTTACTAGTCTTGCTAAAAAATATGACGTTGAGTATGTCACTGACCCCGATTCATATCTCCAATATAATAAACTACGTCGTGCCTATCCTACAATCAAGATCTTCATGCACGGCGTCCCAATAGACTATTATGGACCAAGGAAAGCAGAGTTACTTGCCCGTTATCTGAAGAAATATGTTGCTCCAGATGTCTCAATTCTTGAGTCAGACTCATCAATTAATGAATTTGTTGAAGCTGCTGGGACTTTCTTCCCTATCTATTTGGGTTTTGGTTTAGATGAGTCTGTTATTTCTAAATTCGCGATTAAGTACAAGAAAAAGGCCTGGTTTTCAGTGGCAAAGGGTTTCTCAGAGGATATCATGGTGTCTTATGATTTTGATAAAGTTCCTGCTTTGGTTACTATCCATCCAAATTACAACAATGAGCGGAGCATCTTTTATGGTCCCTTTGAAGAACAATTCTTGGAGGAATTCATAAAACAAAGTCTGTTCCCTCTGGTTCTGCCCATAAACTACGACACTCTTAAGCTACTAAAAGATGACGAGAGGAAAATAGCACTCACAATTGTGGAGGATGAGGATAGTGACCAGACAAAGAATTTGATCAATTTATTAAAGGCTGCTGCATCTGCTAATCGTGACTTGGTGTTTGCTTACGTTGGGGCTAAACAGTGGGGAGAATTTTCTGATTCGTTTGGGGACAAGAAGACCACACTACCAAAAATGGTCATTTGGGACGGGGAGGACGACTACTTAATGTTTGAGTTGCCTCGATGTGAAGCTGGTTCCCTTCAGGAGAAAGCATCTGGAAATGTTACTGGTTCAGAAAGCATCATTGGGAACGATCATGCATCCGAAATCTCAAAATTTATTGAAAGATATAGGGAAGGGAGAACTGAAAAAAGAAGAGTTGCGGGTCCTGCATTTATTGGCTTCATAAACTCACTGATAGGCATCAGGACTGTATACATCATTGTAATTATTGTTGCAGGAATAATGCTTTACCAAAACCTCACCAAAGACGATAATGAATATCGCAGAATCGATACTCCTGCTCGGGACCAGGTCGAGCAAACTAGCAGTTCTACCTCACAGGTTGAAAGGACTGAATATAAGGCTGGTGACAAGGAAGATTGA 3114 42.84 MRRHRFHTLFNLPTISEHSVSESSLLNSMSSSSTQLCASRMGIYEPFHQINSWANAFGSRLDTSILPIIKEDDCVDNKPEFVPFESMDHLESSQEMNKPIDDKVQRRLAQNREAARKSRMRKKVYVQQLETSRLKLVQLEQELERTRQQKGTSCLVDTSHFVFRRLVNPGIAAFEMEYNHWVEEQQRQITELRNALQVHTTEIELQILVESSLNHYHNLFGMKANAAKADVFYLMSGVWRTSAERFFLWIGGFRPSELLNVLKPYFEPLNEQQRADIHKLQQSSRQAEDALTQGMEKLHQNLSLSIASDPIGSYISQMGDGIEKLQALESFVSQRIKSLALPQNPLCGKIKLLKEQLAYANDFWMQRKACLLWASTSTVSAFSVRSGPLDLVNLPSHEKLRHVPVTTIIFNTIRHRLQGMYASASYYSGCQATTQYFNESCLQIRALVTKLKPFLYSYKPFRPCKKQNLLLGNESNLQIWHFKEQLLKEEEIKSKHKENDRDLLDRRIQHCEDAEIVASPALPSSSFSSAELPLTADGKVLELDESNFDLAISSFDYILVDFYAPWCGHCKRLSPERIRTLNCIFRPYNLISFRNPDGCSISRFTVLDDRSFYFMIRQEVYKSCHLVQSHFPQFLLDAAAPQLAKLKEPVVLAKVNADKFTSLAKKYDVEYVTDPDSYLQYNKLRRAYPTIKIFMHGVPIDYYGPRKAELLARYLKKYVAPDVSILESDSSINEFVEAAGTFFPIYLGFGLDESVISKFAIKYKKKAWFSVAKGFSEDIMVSYDFDKVPALVTIHPNYNNERSIFYGPFEEQFLEEFIKQSLFPLVLPINYDTLKLLKDDERKIALTIVEDEDSDQTKNLINLLKAAASANRDLVFAYVGAKQWGEFSDSFGDKKTTLPKMVIWDGEDDYLMFELPRCEAGSLQEKASGNVTGSESIIGNDHASEISKFIERYREGRTEKRRVAGPAFIGFINSLIGIRTVYIIVIIVAGIMLYQNLTKDDNEYRRIDTPARDQVEQTSSSTSQVERTEYKAGDKED 1037
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5134947 5146527 + Lsi03G004530.1 Lsi03g00453 658203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00453 1037 Gene3D Glutaredoxin 528 730 - -
Lsi03g00453 1037 Gene3D - 102 154 - -
Lsi03g00453 1037 ProSiteProfiles DOG1 domain profile. 171 376 IPR025422 GO:0006351|GO:0043565
Lsi03g00453 1037 Pfam bZIP transcription factor 102 143 IPR004827 GO:0003700|GO:0006355
Lsi03g00453 1037 SUPERFAMILY Leucine zipper domain 103 147 IPR046347 GO:0003700|GO:0006355
Lsi03g00453 1037 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 101 145 IPR004827 GO:0003700|GO:0006355
Lsi03g00453 1037 CDD bZIP_HBP1b-like 103 149 - -
Lsi03g00453 1037 Pfam Thioredoxin-like domain 758 910 - -
Lsi03g00453 1037 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 106 121 IPR004827 GO:0003700|GO:0006355
Lsi03g00453 1037 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 636 1037 - -
Lsi03g00453 1037 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-2 527 576 - -
Lsi03g00453 1037 CDD PDI_a_family 541 715 - -
Lsi03g00453 1037 Gene3D Glutaredoxin 811 962 - -
Lsi03g00453 1037 SMART brlzneu 99 161 IPR004827 GO:0003700|GO:0006355
Lsi03g00453 1037 Coils Coil 270 290 - -
Lsi03g00453 1037 Coils Coil 182 202 - -
Lsi03g00453 1037 PANTHER PROTEIN DISULFIDE ISOMERASE 527 576 - -
Lsi03g00453 1037 PANTHER PROTEIN DISULFIDE ISOMERASE 636 1037 - -
Lsi03g00453 1037 Coils Coil 122 149 - -
Lsi03g00453 1037 Pfam Seed dormancy control 188 263 IPR025422 GO:0006351|GO:0043565
Lsi03g00453 1037 ProSiteProfiles Thioredoxin domain profile. 521 720 IPR013766 -
Lsi03g00453 1037 Pfam Thioredoxin 540 576 IPR013766 -
Lsi03g00453 1037 MobiDBLite consensus disorder prediction 1008 1037 - -
Lsi03g00453 1037 SUPERFAMILY Thioredoxin-like 541 718 IPR036249 -
Lsi03g00453 1037 MobiDBLite consensus disorder prediction 1013 1027 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00453 Lsi-Chr3:5134947 Lsi04g00016 Lsi-Chr4:217909 1.11E-71 dispersed
Lsi08g00442 Lsi-Chr8:12044547 Lsi03g00453 Lsi-Chr3:5134947 6.98E-14 dispersed
Lsi10g01563 Lsi-Chr10:20043301 Lsi03g00453 Lsi-Chr3:5134947 1.24E-07 dispersed
Lsi03g00453 Lsi-Chr3:5134947 Lsi10g01166 Lsi-Chr10:15933908 6.92E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24971 PF13848 Thioredoxin_6 1.90E-12 CL0172 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00453 K09580 - csv:101217891 645.966