Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00485 | ATGTGGATTCAGACTTGGCCTTTATCAGCTCTGTTTGAATTCAAATCAAGCTATAGAGCTCTCTGTATTGGCGCTCGAAATTCTCTCTCGAGAGCCCATCACCGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACGGTCAGATTCTTGCTTCACTTTCTTGATCTTTTTGCTCTCTTTGCCGATTGGGATTGACTGTTTGGTTTCCAGGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTCAATCTGAACAAACTTGCCGATGCTCTGAAATCGTCCAGCCCTAAATCCTCTCCGGTAGCTTTATCTCTCTCTCCGCTTGGGTTATGGAAGACGAAACAGCTAAAGCGTCCTCGCCAGCCACTCGATATGTCGTCCTTCAGTGTGAGAAGATCTAGCCGTTTTGCTGATAAGCCCCCTCCGAACTATAAGGAGGTGCTCACTGAACCACTTCCAGGTATAAGAAGACTGTTTGGTGTCTATTCGCTTAAAGAAAGCGATGATAATTGGACTAACAGGACTTATCAAAGGAGAGATTTGTTGAATCGGATGTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAGTCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGAGGATTTTGGCTGGGTCTTCCAGGTCAATTTTGCAGGACACACCTTCCCCTTAAGGATGAAATCGTAACTCTGGTGGACAAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGATATATATCATCAGGGCATACAATTTAGAAGACAAAGAAGATACCAATGAGGATTCTGATTCTGATGCCACCCCATTGAAAAAAAGTGGCAAAAGAAATACCAGATCATCAGGGCATAAAACCAGGGGAAATAATTCCGAGAAAAAAGGAGATAGCGGCGAGGATTCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAGATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGTGGATTCCGACATCCCCCAGTTGGAAAAAAGTGGCAAAAGAACTACTAGATCATCAAGTAAAGGGAAAAAGTAA | 1290 | 43.72 | MWIQTWPLSALFEFKSSYRALCIGARNSLSRAHHRKIEGNELQFSDGILQRSDSCFTFLIFLLSLPIGIDCLVSRKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPVALSLSPLGLWKTKQLKRPRQPLDMSSFSVRRSSRFADKPPPNYKEVLTEPLPGIRRLFGVYSLKESDDNWTNRTYQRRDLLNRMYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPGQFCRTHLPLKDEIVTLVDKDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKIYIIRAYNLEDKEDTNEDSDSDATPLKKSGKRNTRSSGHKTRGNNSEKKGDSGEDSDVSQLEKSGKKTTRSSGRKSRANKSKDKADNGVDSDIPQLEKSGKRTTRSSSKGKK | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 5550365 | 5557737 | + | Lsi03G004850.1 | Lsi03g00485 | 658235 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00485 | 429 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED | 78 | 328 | IPR044837 | - | |
Lsi03g00485 | 429 | MobiDBLite | consensus disorder prediction | 330 | 429 | - | - | |
Lsi03g00485 | 429 | PANTHER | B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 | 78 | 328 | - | - | |
Lsi03g00485 | 429 | CDD | B3_DNA | 231 | 322 | IPR003340 | GO:0003677 | |
Lsi03g00485 | 429 | Coils | Coil | 82 | 109 | - | - | |
Lsi03g00485 | 429 | MobiDBLite | consensus disorder prediction | 358 | 386 | - | - | |
Lsi03g00485 | 429 | Pfam | B3 DNA binding domain | 233 | 322 | IPR003340 | GO:0003677 | |
Lsi03g00485 | 429 | ProSiteProfiles | B3 DNA-binding domain profile. | 233 | 324 | IPR003340 | GO:0003677 | |
Lsi03g00485 | 429 | SMART | B3_2 | 233 | 324 | IPR003340 | GO:0003677 | |
Lsi03g00485 | 429 | MobiDBLite | consensus disorder prediction | 393 | 421 | - | - | |
Lsi03g00485 | 429 | Gene3D | - | 207 | 325 | IPR015300 | - | |
Lsi03g00485 | 429 | SUPERFAMILY | DNA-binding pseudobarrel domain | 226 | 323 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00485 | Lsi-Chr3:5550365 | Lsi08g01457 | Lsi-Chr8:22726663 | 1.63E-54 | dispersed | |
Lsi03g00485 | Lsi-Chr3:5550365 | Lsi05g00204 | Lsi-Chr5:2795470 | 1.73E-36 | wgd | |
Lsi03g00485 | Lsi-Chr3:5550365 | Lsi08g01456 | Lsi-Chr8:22719630 | 1.90E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
24973 | PF02362 | B3 | 6.00E-15 | CL0405 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00485 | - | - | bhj:120077841 | 494.582 |