Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00485 ATGTGGATTCAGACTTGGCCTTTATCAGCTCTGTTTGAATTCAAATCAAGCTATAGAGCTCTCTGTATTGGCGCTCGAAATTCTCTCTCGAGAGCCCATCACCGGAAAATCGAAGGGAACGAGCTTCAGTTCAGCGACGGAATCCTACAACGGTCAGATTCTTGCTTCACTTTCTTGATCTTTTTGCTCTCTTTGCCGATTGGGATTGACTGTTTGGTTTCCAGGAAAATGGTGGAATCGAACCTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGGATGGAAGAGCTCAATCTGAACAAACTTGCCGATGCTCTGAAATCGTCCAGCCCTAAATCCTCTCCGGTAGCTTTATCTCTCTCTCCGCTTGGGTTATGGAAGACGAAACAGCTAAAGCGTCCTCGCCAGCCACTCGATATGTCGTCCTTCAGTGTGAGAAGATCTAGCCGTTTTGCTGATAAGCCCCCTCCGAACTATAAGGAGGTGCTCACTGAACCACTTCCAGGTATAAGAAGACTGTTTGGTGTCTATTCGCTTAAAGAAAGCGATGATAATTGGACTAACAGGACTTATCAAAGGAGAGATTTGTTGAATCGGATGTATGCTTCACATGAAGAAAGGCAATATGCTATTGACAGAGCAAGAGACCTTCAATCTAGCCTGGAGTCTAGGTACCCCAGTTTTGTGAAGCCCATGCTTCAATCACATGTCACAGGAGGATTTTGGCTGGGTCTTCCAGGTCAATTTTGCAGGACACACCTTCCCCTTAAGGATGAAATCGTAACTCTGGTGGACAAGGATGAAAATGAGTTCCAAACGAAATACCTTGCCGATAAAACAGGTCTTAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTGTTTCAGTTAACTAATCCAACTGAATTCAAGATATATATCATCAGGGCATACAATTTAGAAGACAAAGAAGATACCAATGAGGATTCTGATTCTGATGCCACCCCATTGAAAAAAAGTGGCAAAAGAAATACCAGATCATCAGGGCATAAAACCAGGGGAAATAATTCCGAGAAAAAAGGAGATAGCGGCGAGGATTCAGATGTCTCTCAGTTGGAAAAAAGTGGCAAAAAAACTACTAGATCATCAGGGCGTAAAAGCAGGGCAAATAAATCCAAAGATAAAGCAGATAACGGCGTGGATTCCGACATCCCCCAGTTGGAAAAAAGTGGCAAAAGAACTACTAGATCATCAAGTAAAGGGAAAAAGTAA 1290 43.72 MWIQTWPLSALFEFKSSYRALCIGARNSLSRAHHRKIEGNELQFSDGILQRSDSCFTFLIFLLSLPIGIDCLVSRKMVESNLTYEECRRQRLEENKKRMEELNLNKLADALKSSSPKSSPVALSLSPLGLWKTKQLKRPRQPLDMSSFSVRRSSRFADKPPPNYKEVLTEPLPGIRRLFGVYSLKESDDNWTNRTYQRRDLLNRMYASHEERQYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPGQFCRTHLPLKDEIVTLVDKDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFQLTNPTEFKIYIIRAYNLEDKEDTNEDSDSDATPLKKSGKRNTRSSGHKTRGNNSEKKGDSGEDSDVSQLEKSGKKTTRSSGRKSRANKSKDKADNGVDSDIPQLEKSGKRTTRSSSKGKK 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5550365 5557737 + Lsi03G004850.1 Lsi03g00485 658235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00485 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 78 328 IPR044837 -
Lsi03g00485 429 MobiDBLite consensus disorder prediction 330 429 - -
Lsi03g00485 429 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS06G0194400 78 328 - -
Lsi03g00485 429 CDD B3_DNA 231 322 IPR003340 GO:0003677
Lsi03g00485 429 Coils Coil 82 109 - -
Lsi03g00485 429 MobiDBLite consensus disorder prediction 358 386 - -
Lsi03g00485 429 Pfam B3 DNA binding domain 233 322 IPR003340 GO:0003677
Lsi03g00485 429 ProSiteProfiles B3 DNA-binding domain profile. 233 324 IPR003340 GO:0003677
Lsi03g00485 429 SMART B3_2 233 324 IPR003340 GO:0003677
Lsi03g00485 429 MobiDBLite consensus disorder prediction 393 421 - -
Lsi03g00485 429 Gene3D - 207 325 IPR015300 -
Lsi03g00485 429 SUPERFAMILY DNA-binding pseudobarrel domain 226 323 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00485 Lsi-Chr3:5550365 Lsi08g01457 Lsi-Chr8:22726663 1.63E-54 dispersed
Lsi03g00485 Lsi-Chr3:5550365 Lsi05g00204 Lsi-Chr5:2795470 1.73E-36 wgd
Lsi03g00485 Lsi-Chr3:5550365 Lsi08g01456 Lsi-Chr8:22719630 1.90E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24973 PF02362 B3 6.00E-15 CL0405 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00485 - - bhj:120077841 494.582