Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00492 ATGGAAGCTCTCTCTGTTACTCTTTACATAATAATATTCCTTTTTCTTTTTGCTTTCTTTTCCATTTCATTTCTTAAAAGAAATGAAAAGCCTAAATCCCAAGAAGCCCTTAAACTTCCTCCTGGTTCCATGGGATTGCCTTGGATTGGTGAAACTTTGCAACTTTATTCTCAAGATCCCAATATTTTTTTCTCAGAAAAACAGAGAAGATATGGAGAAATTTTTAAGACCAACATTTTGGGATATCCTTGTGTGATGTTGGCAAGCGCCGCCGCAGCACGGTTCGTTCTGGTGACAAACGCCAATTTATTCCGGCCGACTTACCCCAAAAGTAAAGAGACGATGATCGGACCGGCGGCACTTTTCTTCCACCAAGGAAATTACCATTCTAACCTCAGGAAACTTGTTCAAAATTCTCTCTCTCTTGAACGACTCAGAATTCTTGTTCCTCATATTGAAGCCGCCGCCATTTCCGCCACCCATTCCTGGGCCGCCGCCGGCCACGTCATCAATACCTTCCTCGAAATGAAAAAGGCAAGGAAGAAGCTTAGGGAGATTCTGGGAGAGATAATTATGGAGAGAAGAGAAAAAAGAGTAACAGAGAGAGATTTAGTGGGTCATCTTTTAAACTTCAGAGATGAAAATGGTCAAAGTTTAAGTGAAGATCAAATCGCCGACAACATCATCGGAGTTCTCTTCGCCGCTCAAGACACCACCGCCACTGCTCTCACCTGGATTCTTAAATATCTTCATGACAACTTGAAGCTCTTTGAGGCTGTTAAGGCAGAGCAAATGGAAATTTATAGAAGAAATGGAGAGGGGAAGATGCCTCTGTCTTGGGCTCAGATTAAGGACATGCCCTTTACTCATAGGGTTGTATTAGAGAGCTTGAGGATGGCTAGCATCATATCCTTCACTTTTAGGGAGGCAGTTGTTGATGTGGAATATAAAGGGTACCTTATCCCAAAGGGTTGGAAGGTCATGCCCTTATTTAGGAATATTCATCACAACCATGAGTACTTCCCTGATCCTCATATCTTTGATCCCTCTAGATTTGAGGTGGCTCCAAGGCCCAATACATTCATGCCATTTGGCAATGGAGTACATTCTTGTCCTGGCAATGAACTTGCCAAGCTGGAGATCCTCATCTTGCTTCATCACCTCATTACCAAATTTAGGTGGGAAGTTGTGGGATCACAAAGTGGGGTTGAGTATGGGCCATTCCCAATGCCTGTCCACGGGCTACCGGCCAGATTTTTCAAACAAACAACAACCAACCAATAG 1284 43.22 MEALSVTLYIIIFLFLFAFFSISFLKRNEKPKSQEALKLPPGSMGLPWIGETLQLYSQDPNIFFSEKQRRYGEIFKTNILGYPCVMLASAAAARFVLVTNANLFRPTYPKSKETMIGPAALFFHQGNYHSNLRKLVQNSLSLERLRILVPHIEAAAISATHSWAAAGHVINTFLEMKKARKKLREILGEIIMERREKRVTERDLVGHLLNFRDENGQSLSEDQIADNIIGVLFAAQDTTATALTWILKYLHDNLKLFEAVKAEQMEIYRRNGEGKMPLSWAQIKDMPFTHRVVLESLRMASIISFTFREAVVDVEYKGYLIPKGWKVMPLFRNIHHNHEYFPDPHIFDPSRFEVAPRPNTFMPFGNGVHSCPGNELAKLEILILLHHLITKFRWEVVGSQSGVEYGPFPMPVHGLPARFFKQTTTNQ 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5625963 5630403 - Lsi03G004920.1 Lsi03g00492 658242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00492 427 PRINTS P450 superfamily signature 291 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS P450 superfamily signature 362 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS P450 superfamily signature 234 251 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 364 373 IPR017972 GO:0005506|GO:0016705
Lsi03g00492 427 Pfam Cytochrome P450 40 158 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 Pfam Cytochrome P450 173 397 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PANTHER CYTOCHROME P450 26 179 421 - -
Lsi03g00492 427 PANTHER CYTOCHROME P450 26 13 178 - -
Lsi03g00492 427 SUPERFAMILY Cytochrome P450 37 420 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 179 421 - -
Lsi03g00492 427 PANTHER CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE 13 178 - -
Lsi03g00492 427 Gene3D Cytochrome P450 28 421 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS E-class P450 group I signature 330 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS E-class P450 group I signature 371 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS E-class P450 group I signature 290 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi03g00492 427 PRINTS E-class P450 group I signature 361 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00492 Lsi-Chr3:5625963 Lsi04g01563 Lsi-Chr4:23194296 0 dispersed
Lsi03g00492 Lsi-Chr3:5625963 Lsi08g01473 Lsi-Chr8:22849026 9.62E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00492 K09843 - csv:101219389 757.673