Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00494 | ATGGCTTCCACAAAGAACGGACAAGAAGACCAGAACCAAGCCGGAAGGCACCAAGAAGTCGGCCACAAGAGTCTCTTGCAAAGCGATGCTCTGTATCAGTACATTCTGGAGACGAGCGTTTATCCAAGGGAGCCTGAATCGATGAAGGAATTAAGAGAATTGACTGCGAAACATCCATGGAACATAATGACGACATCGGCGGATGAAGGACAGTTCTTAAACATGTTATTGAAGTTAATTAATGCTAAGAAAACGATGGAGATTGGAGTTTATACTGGCTACTCGCTTCTCGCTACAGCCCTAGCTCTTCCTGAAGATGGAACGATCCTGGCTATGGATATTAACAGAGAAAATTATGAACTGGGATTGCCGGTGATTGAGAACGCCGGCGTTGCTCATAAGATCGAGTTCAAAGAAGGCCCTGCTCTCCCTGTTCTTGACGAGATGGTTGCTGATGAGAAGAATCATGGAAGCTTTGACTTCATATTCGTGGACGCAGATAAAGATAACTACATAAATTACCACAAAAGATTGATTGATCTAGTCAAAGTTGGGGGAGTGATCGGATACGACAACACCCTATGGAACGGGTCGGTAGTTGCCCCACCAGATGCACCCATGCGCAAGTATGTTAGGTATTACAGGGATTTTGTGTTGGAGCTCAACAAGGCTCTTGCTGCTGACCCTAGGATCGAGATTTGTATGCTCCCCGTTGGTGATGGAATCACTCTCTGTCGTCGGATCAACTAA | 750 | 45.73 | MASTKNGQEDQNQAGRHQEVGHKSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKKTMEIGVYTGYSLLATALALPEDGTILAMDINRENYELGLPVIENAGVAHKIEFKEGPALPVLDEMVADEKNHGSFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRIN | 249 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 5668382 | 5671041 | - | Lsi03G004940.1 | Lsi03g00494 | 658244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00494 | 249 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 24 | 248 | IPR002935 | GO:0008171 | |
| Lsi03g00494 | 249 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lsi03g00494 | 249 | Pfam | O-methyltransferase | 37 | 248 | IPR002935 | GO:0008171 | |
| Lsi03g00494 | 249 | CDD | AdoMet_MTases | 87 | 188 | - | - | |
| Lsi03g00494 | 249 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 28 | 247 | IPR029063 | - | |
| Lsi03g00494 | 249 | PANTHER | CAFFEOYL-COA O-METHYLTRANSFERASE 1 | 6 | 249 | - | - | |
| Lsi03g00494 | 249 | Gene3D | Vaccinia Virus protein VP39 | 23 | 249 | IPR029063 | - | |
| Lsi03g00494 | 249 | PANTHER | O-METHYLTRANSFERASE-RELATED | 6 | 249 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00494 | Lsi-Chr3:5668382 | Lsi04g00676 | Lsi-Chr4:6185301 | 1.16E-66 | dispersed | |
| Lsi07g00844 | Lsi-Chr7:9424853 | Lsi03g00494 | Lsi-Chr3:5668382 | 3.92E-30 | transposed | |
| Lsi01g00967 | Lsi-Chr1:7885583 | Lsi03g00494 | Lsi-Chr3:5668382 | 9.78E-10 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00494 | K00588 | - | csv:101205648 | 494.967 |