Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00496 ATGGGTATCTTTCCAAAGCAAAAAATCTGGAGAGCAGGAACGACCCATGATGATTCGATGAGTTTCAATGGGGTTTCTACAGCGAGCAAGAGGAAATGGACCCGGTTTTTGCCCCTGTTTGTGGCCATTGTGGTTATAGCAGAGATCGCTTCTCTGAGTCGGCTTGACATGGCGAAAAATGCGGCTATGGTGGATTCTTGGGTTGACTTGTTTTATGGATCTCCGGTTTTGCAAGAAGGGAATGAAGGTGGTAGTAAAATGAGCACTGGAATGTCTATTGATGATGGAGTAATTGATAGAGTTAGCTGCGAGGAGTGGCTGGAGAAGGAAGATGCTGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGTTCCGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTTAATCCTGGCCAGCAGCCTGATGCTGTATTCGGATCACCTCATCAAGGTGGTGCTGCTAGCGTACTTCGATCCATGGAATCATCGCATTACTATCCAGAGAACAATATTGCTATGGCGAGACGTAATTCTTGCAAATACTATTTTAAGTTTATGAAACTGCACCTCAATGACAAAGTTAAGTACCAAACTGCCACCATGCACTTCACAAAGTTGTCGGTGAGCCTTCGGATTATATGGTTCAAGGAAATTAACTGGATCCTCATCCCTGTTCAATCTTCATCATCTAGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTCCCTGTTGGATATTTTTCATGGGCAGAATACGAGATAATGGCACCAGTGCAGCCAAAGACCGAGCCTGCCCATGCAGCTGCCTTCATTTCAAATTGTGGTGCCCGCAACTTTCGTTTGCAAGCTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTAGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTACAAGTTCAGCTTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACGGAAAAGTTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGCGCTCCAAATATCAATGAGTTTGCTCCTTCTCCTGATTCATTTTTGCACATCAAGGAATTTTCCGATGTTGAGTCGATTGCGAAGTCCATGAAATACCTTGCTGAAAATCCCAAAATGTACAATCAATCGCTAAGATGGAAGTACGACGGTCCATCTGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCCATACACTCATCCTGCCGCCTTTGCATCCATATGGCAACCATCATCCATGAGAAAGAAGAAAACAGTCCTGGGTTCAAGAAACGACCGTGCAAGTGTTCTCGAGGCTCTGAAACCGTGTATCATTTATACGTCAGGAAATCTGACGTTGGAGGCTTTAGAATCAAGGGTACTCGAAAAGTTCAATTCTTTGAAACACGTACCAATTTGGAAGCAAGAACGACCCAAAAGCATAAGAGGAGGAGATGA 1524 44.29 MGIFPKQKIWRAGTTHDDSMSFNGVSTASKRKWTRFLPLFVAIVVIAEIASLSRLDMAKNAAMVDSWVDLFYGSPVLQEGNEGGSKMSTGMSIDDGVIDRVSCEEWLEKEDAVEYSRDFKREPVLVSGSEKEWRTCDVGCQFGFNPGQQPDAVFGSPHQGGAASVLRSMESSHYYPENNIAMARRNSCKYYFKFMKLHLNDKVKYQTATMHFTKLSVSLRIIWFKEINWILIPVQSSSSRKGYTVVMTTSLSSDVPVGYFSWAEYEIMAPVQPKTEPAHAAAFISNCGARNFRLQALDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNINEFAPSPDSFLHIKEFSDVESIAKSMKYLAENPKMYNQSLRWKYDGPSESFKALVDMAAIHSSCRLCIHMATIIHEKEENSPGFKKRPCKCSRGSETVYHLYVRKSDVGGFRIKGTRKVQFFETRTNLEARTTQKHKRRR 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5700301 5705975 - Lsi03G004960.1 Lsi03g00496 658246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00496 507 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 188 443 - -
Lsi03g00496 507 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 279 439 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi03g00496 507 Gene3D - 235 417 IPR038577 -
Lsi03g00496 507 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 239 472 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lsi03g00496 507 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 33 187 - -
Lsi03g00496 507 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 239 472 - -
Lsi03g00496 507 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 33 187 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi08g00608 Lsi-Chr8:14384684 Lsi03g00496 Lsi-Chr3:5700301 5.04E-13 transposed
Lsi03g00496 Lsi-Chr3:5700301 Lsi05g00214 Lsi-Chr5:2924983 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00496 K00753 - csv:101205170 735.717