Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00505 ATGGCTCAGGTTCCACCTCAACCTCAAGTTCCCAACTCCGGTGCCGATCCGGCCGCCAATGGAGGGGCTAATCAGCATGTCACCACCTCCTTGTATGTTGGAGATCTTGACGTTAACGTCACCGATTCCCAGCTCTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGACCACCCGCCGATCGCTTGGTTATGGCTATGTCAATTACAGCAACCCAGTTGATGCTTCAAGGGCATTAGATGTGCTAAACTTTACCCCTTTGAATGGGAATCCCATTAGAGTCATGTATTCACATCGTGATCCTAGCGTTCGGAAAAGTGGGTCTGGAAATATTTTTATCAAGAACTTGGACAAGGCAATTGATCACAAAGCGTTGCATGATACTTTTTCTGCATTTGGAAGCATTCTATCTTGCAAGGTTGCTACAGATGCATCTGGCCAGTCTAAAGGTTTTGGTTTTGTGCAATTTGACACTGAGGAAGCTGCCTTAAAAGCTATAGAAAAGTTGAATGGTATGCTGCTAAATGACAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAGAGTGTCAGTGAGAAAACGAAATTTAATAATGTTTTTGTTAAGAATCTAGCAGAAACTACATCTGAAGAAGATTTGAAGAATATGTTTGGTGAGTTTGGACCAATCACTAGTGTTGTGGTAATGAGGGACGGGGAAGGAAAATCAAAATGCTTTGGCTTTGTAAACTTTGAGAATGCGGATGATGCTGCTAGATCTGTTGAAGTACTTAATGGAAAGAAGGTTGATGGGAAGGAGTGGTACGTTGGGAAAGCCCAGAAGAAATCTGAAAGGGAAGTTGAACTGAAAAGTCGATTTGAGCAGAGTGTAAAAGAAGCTGCTGACAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGATAGCATTGACGATGATATACTGAAGGACTTATTCACTGGATTTGGAACCATTACCTCATGCAAGGTTGTTATGCGTGACCCCAATGGAATCAGTAGAGGATCTGGCTTTGTTGCATTCGCTACTCCTGAAGAGGCTGCAAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGTGAGCAAACCTCTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAATTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGACAACAAATATTCTATGGACAGGCTCCACCTACTATCATTTCCTCACAGCCTGGCTTTGGTTATCAACAGCAACTCATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTGCTGGGGCTATTCAACAAACCCAGCAGCCTGTTCCTTTGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTATCCTCCTGGACGTGGACTGCCTGATCTTCCCATGCCTGGTGTTGCCGGAGGCATGTTCTCTGTTCCATATGAGATGGGTGGAATGCCACCGCGAGATGCTGTCCACCCTCAACCAGTTCCTGTGGGTGCTTTGGCTTCTGCTCTTGCAAATGCAACTCCAGACCAGCAGAGAACGATGCTGGGGGAGAACCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCGGCCAAGGTAACAGGAATGCTATTGGAAATGGACCAAACTGAGGTTCTGCACTTGCTCGAGTCGCCTGAAGCTCTGAAAGCCAAGGTGGCGGAGGCAATGGAGGTTTTAAGAAGTGTCGCTCAGCAGACCGGCAATGCAGCTGATCAATTGGCTTCACTATCACTGACTGACAACCTTGATTCCTAA 1953 46.29 MAQVPPQPQVPNSGADPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDASGQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVVMRDGEGKSKCFGFVNFENADDAARSVEVLNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDILKDLFTGFGTITSCKVVMRDPNGISRGSGFVAFATPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQTGNAADQLASLSLTDNLDS 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5831144 5835525 - Lsi03G005050.1 Lsi03g00505 658255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00505 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Lsi03g00505 650 PANTHER POLYADENYLATE-BINDING PROTEIN 18 635 - -
Lsi03g00505 650 CDD RRM1_I_PABPs 30 109 - -
Lsi03g00505 650 SMART poly_2 565 628 IPR002004 GO:0003723
Lsi03g00505 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Lsi03g00505 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 101 IPR000504 GO:0003723
Lsi03g00505 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 382 IPR000504 GO:0003723
Lsi03g00505 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Lsi03g00505 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Lsi03g00505 650 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Lsi03g00505 650 Gene3D - 198 291 IPR012677 -
Lsi03g00505 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 389 IPR000504 GO:0003723
Lsi03g00505 650 MobiDBLite consensus disorder prediction 1 23 - -
Lsi03g00505 650 SMART rrm1_1 209 281 IPR000504 GO:0003723
Lsi03g00505 650 SMART rrm1_1 30 103 IPR000504 GO:0003723
Lsi03g00505 650 SMART rrm1_1 118 190 IPR000504 GO:0003723
Lsi03g00505 650 SMART rrm1_1 312 385 IPR000504 GO:0003723
Lsi03g00505 650 CDD RRM3_I_PABPs 207 286 - -
Lsi03g00505 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Lsi03g00505 650 SUPERFAMILY PABC (PABP) domain 494 639 IPR036053 GO:0003723
Lsi03g00505 650 Pfam Poly-adenylate binding protein, unique domain 561 625 IPR002004 GO:0003723
Lsi03g00505 650 SMART rrm2_1 209 281 IPR003954 GO:0003676
Lsi03g00505 650 SMART rrm2_1 118 190 IPR003954 GO:0003676
Lsi03g00505 650 SMART rrm2_1 312 385 IPR003954 GO:0003676
Lsi03g00505 650 SMART rrm2_1 30 103 IPR003954 GO:0003676
Lsi03g00505 650 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 626 IPR006515 GO:0003723
Lsi03g00505 650 Gene3D - 548 632 - -
Lsi03g00505 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 553 630 IPR002004 GO:0003723
Lsi03g00505 650 Gene3D - 292 398 IPR012677 -
Lsi03g00505 650 CDD RRM2_I_PABPs 115 191 IPR045305 -
Lsi03g00505 650 PANTHER RNA BINDING PROTEIN 18 635 - -
Lsi03g00505 650 Gene3D - 4 110 IPR012677 -
Lsi03g00505 650 Gene3D - 111 197 IPR012677 -
Lsi03g00505 650 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00505 Lsi-Chr3:5831144 Lsi08g00587 Lsi-Chr8:14135174 0 dispersed
Lsi03g01125 Lsi-Chr3:21474292 Lsi03g00505 Lsi-Chr3:5831144 9.25E-07 transposed
Lsi03g01165 Lsi-Chr3:22017206 Lsi03g00505 Lsi-Chr3:5831144 1.65E-07 transposed
Lsi05g01351 Lsi-Chr5:21375433 Lsi03g00505 Lsi-Chr3:5831144 1.59E-19 transposed
Lsi05g01867 Lsi-Chr5:25898064 Lsi03g00505 Lsi-Chr3:5831144 2.04E-10 transposed
Lsi08g00104 Lsi-Chr8:2173537 Lsi03g00505 Lsi-Chr3:5831144 1.71E-08 transposed
Lsi05g02174 Lsi-Chr5:28408307 Lsi03g00505 Lsi-Chr3:5831144 9.08E-13 transposed
Lsi03g00505 Lsi-Chr3:5831144 Lsi05g00226 Lsi-Chr5:3013456 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00505 K13126 - csv:101223017 1188.33