Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00521 ATGGCGATTTCCCCCACTTTCTCCTTCCCCATCCTCGCTTTTCTAGCCCTCTTTCTCTGTTTTTTCCCATTTTCATCCGCTTCCCATTCATCCACCTTCTCCATCATTGATGAAAACGCTAAACACCACTTGGGTATCCCTGAAATTGCCGATTCTGATACCCAAGGATCCCCTCAACGGACCGACGACGAGGTTGCGGCTCTGTACGAGTCCTGGTTGGTCCATCATGGAAAAGCCTACAACGCTCTCGGCGAGAAGGAGAGACGGTTCGAGATTTTTAAGGATAATCTCAGGTTCATCGATGAACATAACCATGAATCGCGGACGTATAAGGTTGGATTAACCCGTTTCGCCGATCTCACCAATGAGGAGTATCGGGCAATGTTTTTGGGTGGCCGATTCTCCCGGAAGCCTCGCCTATCCGCCGCCAAGAGCGGTAGATACGCGGCGGCGCTCGGCGATGATCTTCCGGATCATGTCGATTGGAGAAAGAAGGGCGCCGTTGCGGCTGTTAAAGATCAAGGACAGTGTGGGAGCTGTTGGGCTTTCTCAACAGTTGCTGCAGTGGAAGGAATAAACCAGATCGTCACTGGTGAATTGATCTCTCTGTCGGAGCAGGAACTTGTGGACTGTGACAAATCATATAACATGGGGTGCAATGGTGGTCTTATGGACTATGCTTTCCAATTCATCATTGACAATGGTGGAATTGACACCGACGAAGATTACCCTTACAAGGGACGTGATGGTGCTTGCGATCTCAACCGGAAAAATGCCAAGGTTGTAACCATCGAAGGATATGAAGATGTTCCTGAGAATGATGAGGGCTCCTTGAAAAAGGCTGTGGCAAGTCAACCAGTTAGTGTTGCCATTGAAGCTGGTGGCAGAGCCTTCCAACTTTACCAATCGGGTGTCTTCACTGGCCGTTGCGGAACGGATCTGGATCACGGTGTTGTCGCTGTTGGATATGGTACAGAAAATGGTACAGATTATTGGATTGTGAGGAATTCATGGGGTAAAAACTGGGGAGAGAATGGTTATATCAGGCTGGAGAGAAATGTGGCCAACATTTCCACAGGCAAATGTGGTATAGCAGTAGAGCCTTCATACCCCATCAAAACCGGAATGAACCCTCCAAAACCTGCTGCTTCTCCACCATCTCCTGTCAAGCCCCCAACTCAATGCGACGACTACTACTCGTGCGAGGAAGGAACTACCTGCTGCTGTATCTATCAGTATGGAAGCACCTGCTTTGGTTGGGGATGCTGCCCGCTTGAGTCTGCAACCTGCTGTGATGACCATTACAGTTGCTGCCCCCATGAATATCCCATCTGTGACCTTGAGGCAGGAACTTGCCTAATGGTAAAGCAAAGACAGCACAATGGGAGTCAAACTGCTGAAGCGCCTTCCTGCGAAGCGTACGAAGGGCATTCAGAAGCTTGGGAAGCTGTTCATTGGTGCTTGAGAGGTCTGGCAATGGTGGTGGTGTCATCGGTGAAATCGACCATTTGA 1512 49.67 MAISPTFSFPILAFLALFLCFFPFSSASHSSTFSIIDENAKHHLGIPEIADSDTQGSPQRTDDEVAALYESWLVHHGKAYNALGEKERRFEIFKDNLRFIDEHNHESRTYKVGLTRFADLTNEEYRAMFLGGRFSRKPRLSAAKSGRYAAALGDDLPDHVDWRKKGAVAAVKDQGQCGSCWAFSTVAAVEGINQIVTGELISLSEQELVDCDKSYNMGCNGGLMDYAFQFIIDNGGIDTDEDYPYKGRDGACDLNRKNAKVVTIEGYEDVPENDEGSLKKAVASQPVSVAIEAGGRAFQLYQSGVFTGRCGTDLDHGVVAVGYGTENGTDYWIVRNSWGKNWGENGYIRLERNVANISTGKCGIAVEPSYPIKTGMNPPKPAASPPSPVKPPTQCDDYYSCEEGTTCCCIYQYGSTCFGWGCCPLESATCCDDHYSCCPHEYPICDLEAGTCLMVKQRQHNGSQTAEAPSCEAYEGHSEAWEAVHWCLRGLAMVVVSSVKSTI 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6054071 6057089 + Lsi03G005210.1 Lsi03g00521 658271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00521 503 CDD Peptidase_C1A 157 371 IPR039417 -
Lsi03g00521 503 SMART GRAN_2 395 452 IPR000118 -
Lsi03g00521 503 SMART Inhibitor_I29_2 69 125 IPR013201 -
Lsi03g00521 503 Pfam Cathepsin propeptide inhibitor domain (I29) 69 125 IPR013201 -
Lsi03g00521 503 Gene3D Cysteine proteinases 51 374 - -
Lsi03g00521 503 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 174 185 IPR000169 -
Lsi03g00521 503 SUPERFAMILY Granulin repeat 392 426 - -
Lsi03g00521 503 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 331 350 IPR025661 -
Lsi03g00521 503 Gene3D Granulin 392 455 IPR037277 -
Lsi03g00521 503 PRINTS Papain cysteine protease (C1) family signature 174 189 IPR000668 GO:0006508|GO:0008234
Lsi03g00521 503 PRINTS Papain cysteine protease (C1) family signature 331 337 IPR000668 GO:0006508|GO:0008234
Lsi03g00521 503 PRINTS Papain cysteine protease (C1) family signature 316 326 IPR000668 GO:0006508|GO:0008234
Lsi03g00521 503 PANTHER CYSTEINE PROTEASE 49 402 - -
Lsi03g00521 503 SUPERFAMILY Cysteine proteinases 61 372 IPR038765 -
Lsi03g00521 503 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 314 324 IPR025660 -
Lsi03g00521 503 SMART pept_c1 156 372 IPR000668 GO:0006508|GO:0008234
Lsi03g00521 503 Pfam Granulin 406 453 IPR000118 -
Lsi03g00521 503 Pfam Papain family cysteine protease 156 372 IPR000668 GO:0006508|GO:0008234
Lsi03g00521 503 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 49 402 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00521 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - csv:101222543 821.617
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00521 Lsi-Chr3:6054071 Lsi11g01302 Lsi-Chr11:21647277 2.65E-126 dispersed
Lsi05g02070 Lsi-Chr5:27613096 Lsi03g00521 Lsi-Chr3:6054071 1.68E-06 dispersed
Lsi08g01353 Lsi-Chr8:21835504 Lsi03g00521 Lsi-Chr3:6054071 3.13E-61 dispersed
Lsi08g01359 Lsi-Chr8:21908730 Lsi03g00521 Lsi-Chr3:6054071 7.05E-20 transposed
Lsi01g00958 Lsi-Chr1:7765683 Lsi03g00521 Lsi-Chr3:6054071 6.05E-163 wgd
Lsi03g00521 Lsi-Chr3:6054071 Lsi04g01527 Lsi-Chr4:22877367 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00521 Lsi_Chr03 FPKM 0.0 0.488832 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0