Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi03g00522 | ATGGTTAAGGGTCATATAATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACAACTGGAATGGATAATGCAGCCCGTGATGCACCATCTAAGCTGTCTCCTAGTGGTATAACTTCCTGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGGCTGACAATGCTGCTGGGAAGTCAGCCTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCGAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGAAAGCAGAAAATGCAAATTTTGGACCTCAAGCAGCAGTTATTTCTGTCGGACTAACATCGGATGTTACATGTCTAATAGCATTTATTGACTCAGTATTGAATAAAGTAACAGAATATGAAATGCTTGTTTGTTTGTTTTTAGAAAAAGATACAAAATATGATATAACATATGGAGAAGACAATTTAATTTGGTTCTGGTTAAAGTATTCCCTGCATTTGATGTATCATGAAGGTGGGTTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTTTTCGAATCACATCACAAGGGGAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACGGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTATATCTCCAATTCTCCTTTCAGCCAAGAAGTTCACTATTCCGATTGATAATTTATGGTGTGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAACCAAAAGTCTCTCGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGGTATAATTTACCTGAATCCCTACTCCCCAACACTCAGCTCCTTGGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACGAATGATCTTGATGGGTTTGACAAGGTGAATACCGTAGTTTCATTGTCTCGTAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACATGGACAATACTACCAAAAAGTCGGATGAAAGCTCAGGCTCAAAACCTTCTGCAGCTGATGGAAGTGGAGTTTCTGAGAATCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCTACTTCAGGTTCAGGGGCTGACGGATCAGCTGTCAAGACAACATCTAAATCTCAAACAAGTACGACATCATCAGACGGTGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCATAGGAGATGGTGGAGCTAAACAGACTGCTCCTTCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGATGACGAAGACTATGAGAGTGAGTAA | 2193 | 41.72 | MVKGHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNAARDAPSKLSPSGITSWAKNLKISQPQSASQDGTADNAAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQKAENANFGPQAAVISVGLTSDVTCLIAFIDSVLNKVTEYEMLVCLFLEKDTKYDITYGEDNLIWFWLKYSLHLMYHEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGISPILLSAKKFTIPIDNLWCGVLFSTKMHPRTKSLSKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYWYNLPESLLPNTQLLGWLNTTMTENRKMLYTNDLDGFDKVNTVVSLSRRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPSAADGSGVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGADGSAVKTTSKSQTSTTSSDGVASLTHATKQVSIGDGGAKQTAPSSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE | 730 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 6061136 | 6067072 | + | Lsi03G005220.1 | Lsi03g00522 | 658272 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi03g00522 | 730 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 228 | 730 | - | - | |
Lsi03g00522 | 730 | PANTHER | PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A | 19 | 156 | - | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
Lsi03g00522 | 730 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 341 | 380 | IPR000387 | GO:0016311|GO:0016791 | |
Lsi03g00522 | 730 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 240 | 408 | IPR029021 | - | |
Lsi03g00522 | 730 | ProSiteProfiles | Phosphatase tensin-type domain profile. | 227 | 406 | IPR029023 | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 97 | 119 | - | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 51 | 79 | - | - | |
Lsi03g00522 | 730 | CDD | PTP_PTEN | 237 | 402 | IPR045101 | GO:0016791 | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 609 | 630 | - | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 574 | 608 | - | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 572 | 730 | - | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 631 | 680 | - | - | |
Lsi03g00522 | 730 | Gene3D | Protein tyrosine phosphatase superfamily | 225 | 413 | IPR029021 | - | |
Lsi03g00522 | 730 | ProSiteProfiles | C2 tensin-type domain profile. | 413 | 575 | IPR014020 | - | |
Lsi03g00522 | 730 | SMART | PTEN_C2_2 | 411 | 574 | IPR014020 | - | |
Lsi03g00522 | 730 | MobiDBLite | consensus disorder prediction | 8 | 38 | - | - | |
Lsi03g00522 | 730 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 343 | 353 | IPR016130 | GO:0016311|GO:0016791 | |
Lsi03g00522 | 730 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 228 | 730 | - | - | |
Lsi03g00522 | 730 | PANTHER | PHOSPHATASE WITH HOMOLOGY TO TENSIN | 19 | 156 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01516 | Lsi-Chr3:26173837 | Lsi03g00522 | Lsi-Chr3:6061136 | 2.18E-42 | transposed | |
Lsi01g00954 | Lsi-Chr1:7754241 | Lsi03g00522 | Lsi-Chr3:6061136 | 1.08E-24 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi03g00522 | K01110 | - | csv:101222304 | 837.025 |