Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00522 ATGGTTAAGGGTCATATAATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACAACTGGAATGGATAATGCAGCCCGTGATGCACCATCTAAGCTGTCTCCTAGTGGTATAACTTCCTGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGGCTGACAATGCTGCTGGGAAGTCAGCCTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCGAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGAAAGCAGAAAATGCAAATTTTGGACCTCAAGCAGCAGTTATTTCTGTCGGACTAACATCGGATGTTACATGTCTAATAGCATTTATTGACTCAGTATTGAATAAAGTAACAGAATATGAAATGCTTGTTTGTTTGTTTTTAGAAAAAGATACAAAATATGATATAACATATGGAGAAGACAATTTAATTTGGTTCTGGTTAAAGTATTCCCTGCATTTGATGTATCATGAAGGTGGGTTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTTTTCGAATCACATCACAAGGGGAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACGGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTATATCTCCAATTCTCCTTTCAGCCAAGAAGTTCACTATTCCGATTGATAATTTATGGTGTGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAACCAAAAGTCTCTCGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGGTATAATTTACCTGAATCCCTACTCCCCAACACTCAGCTCCTTGGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACGAATGATCTTGATGGGTTTGACAAGGTGAATACCGTAGTTTCATTGTCTCGTAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACATGGACAATACTACCAAAAAGTCGGATGAAAGCTCAGGCTCAAAACCTTCTGCAGCTGATGGAAGTGGAGTTTCTGAGAATCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCTACTTCAGGTTCAGGGGCTGACGGATCAGCTGTCAAGACAACATCTAAATCTCAAACAAGTACGACATCATCAGACGGTGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCATAGGAGATGGTGGAGCTAAACAGACTGCTCCTTCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGATGACGAAGACTATGAGAGTGAGTAA 2193 41.72 MVKGHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNAARDAPSKLSPSGITSWAKNLKISQPQSASQDGTADNAAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQKAENANFGPQAAVISVGLTSDVTCLIAFIDSVLNKVTEYEMLVCLFLEKDTKYDITYGEDNLIWFWLKYSLHLMYHEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGISPILLSAKKFTIPIDNLWCGVLFSTKMHPRTKSLSKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYWYNLPESLLPNTQLLGWLNTTMTENRKMLYTNDLDGFDKVNTVVSLSRRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPSAADGSGVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGADGSAVKTTSKSQTSTTSSDGVASLTHATKQVSIGDGGAKQTAPSSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6061136 6067072 + Lsi03G005220.1 Lsi03g00522 658272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00522 730 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 228 730 - -
Lsi03g00522 730 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 19 156 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 1 79 - -
Lsi03g00522 730 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 341 380 IPR000387 GO:0016311|GO:0016791
Lsi03g00522 730 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 240 408 IPR029021 -
Lsi03g00522 730 ProSiteProfiles Phosphatase tensin-type domain profile. 227 406 IPR029023 -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 97 119 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 51 79 - -
Lsi03g00522 730 CDD PTP_PTEN 237 402 IPR045101 GO:0016791
Lsi03g00522 730 MobiDBLite consensus disorder prediction 609 630 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 574 608 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 572 730 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 631 680 - -
Lsi03g00522 730 Gene3D Protein tyrosine phosphatase superfamily 225 413 IPR029021 -
Lsi03g00522 730 ProSiteProfiles C2 tensin-type domain profile. 413 575 IPR014020 -
Lsi03g00522 730 SMART PTEN_C2_2 411 574 IPR014020 -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 8 38 - -
Lsi03g00522 730 ProSitePatterns Tyrosine specific protein phosphatases active site. 343 353 IPR016130 GO:0016311|GO:0016791
Lsi03g00522 730 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 228 730 - -
Lsi03g00522 730 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 19 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01516 Lsi-Chr3:26173837 Lsi03g00522 Lsi-Chr3:6061136 2.18E-42 transposed
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g00522 Lsi-Chr3:6061136 1.08E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00522 K01110 - csv:101222304 837.025