Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00522 ATGGTTAAGGGTCATATAATGGATCCAAATTCTACTGATTCCTCAACATCACCTACTGTTAATTCCTCGGAAACTAAACCACCAGAAGTACAGCCTCAGGCTCCTGCTACAACTGGAATGGATAATGCAGCCCGTGATGCACCATCTAAGCTGTCTCCTAGTGGTATAACTTCCTGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAACGGCTGACAATGCTGCTGGGAAGTCAGCCTTTGCACGTTTTACTAGTGGCTTAGGTTTGAACTTATCTCCGAAATCTGCTGCACCTAATGATTCCCCAGATGGAACTTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGAAAGCAGAAAATGCAAATTTTGGACCTCAAGCAGCAGTTATTTCTGTCGGACTAACATCGGATGTTACATGTCTAATAGCATTTATTGACTCAGTATTGAATAAAGTAACAGAATATGAAATGCTTGTTTGTTTGTTTTTAGAAAAAGATACAAAATATGATATAACATATGGAGAAGACAATTTAATTTGGTTCTGGTTAAAGTATTCCCTGCATTTGATGTATCATGAAGGTGGGTTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATCAAGTTTTTCGAATCACATCACAAGGGGAAGTACAAAGTATATAATCTTTGTTCCGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACGGGCTTGATGATTTCCAGTCTTCTTCTATTTCTGAAGTTCTTTCCAACCGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGGTTTTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGAGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTATATCTCCAATTCTCCTTTCAGCCAAGAAGTTCACTATTCCGATTGATAATTTATGGTGTGGTGTTCTGTTCTCCACTAAAATGCATCCAAGAACCAAAAGTCTCTCGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGTGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGGTATAATTTACCTGAATCCCTACTCCCCAACACTCAGCTCCTTGGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACGAATGATCTTGATGGGTTTGACAAGGTGAATACCGTAGTTTCATTGTCTCGTAGGAAACTACCTTCCCCCGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACATGGACAATACTACCAAAAAGTCGGATGAAAGCTCAGGCTCAAAACCTTCTGCAGCTGATGGAAGTGGAGTTTCTGAGAATCAAAACAGAAAATCAGGAACTAATGATAGAGATGATGTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCTACTTCAGGTTCAGGGGCTGACGGATCAGCTGTCAAGACAACATCTAAATCTCAAACAAGTACGACATCATCAGACGGTGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCATAGGAGATGGTGGAGCTAAACAGACTGCTCCTTCCAGTGATCGAAAAGGCGATGGAGCTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAACTCAGAAAGTGAATTCAAGGCAATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGATGACGAAGACTATGAGAGTGAGTAA 2193 41.72 MVKGHIMDPNSTDSSTSPTVNSSETKPPEVQPQAPATTGMDNAARDAPSKLSPSGITSWAKNLKISQPQSASQDGTADNAAGKSAFARFTSGLGLNLSPKSAAPNDSPDGTSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQKAENANFGPQAAVISVGLTSDVTCLIAFIDSVLNKVTEYEMLVCLFLEKDTKYDITYGEDNLIWFWLKYSLHLMYHEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGISPILLSAKKFTIPIDNLWCGVLFSTKMHPRTKSLSKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYWYNLPESLLPNTQLLGWLNTTMTENRKMLYTNDLDGFDKVNTVVSLSRRKLPSPGFQVEVVLVDTSPNMDNTTKKSDESSGSKPSAADGSGVSENQNRKSGTNDRDDVFSDSESEGGSSKSKKEATSGSGADGSAVKTTSKSQTSTTSSDGVASLTHATKQVSIGDGGAKQTAPSSDRKGDGAGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6061136 6067072 + Lsi03G005220.1 Lsi03g00522 658272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00522 730 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 228 730 - -
Lsi03g00522 730 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 19 156 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 1 79 - -
Lsi03g00522 730 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 341 380 IPR000387 GO:0016311|GO:0016791
Lsi03g00522 730 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 240 408 IPR029021 -
Lsi03g00522 730 ProSiteProfiles Phosphatase tensin-type domain profile. 227 406 IPR029023 -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 97 119 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 51 79 - -
Lsi03g00522 730 CDD PTP_PTEN 237 402 IPR045101 GO:0016791
Lsi03g00522 730 MobiDBLite consensus disorder prediction 609 630 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 574 608 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 572 730 - -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 631 680 - -
Lsi03g00522 730 Gene3D Protein tyrosine phosphatase superfamily 225 413 IPR029021 -
Lsi03g00522 730 ProSiteProfiles C2 tensin-type domain profile. 413 575 IPR014020 -
Lsi03g00522 730 SMART PTEN_C2_2 411 574 IPR014020 -
Lsi03g00522 730 MobiDBLite consensus disorder prediction 8 38 - -
Lsi03g00522 730 ProSitePatterns Tyrosine specific protein phosphatases active site. 343 353 IPR016130 GO:0016311|GO:0016791
Lsi03g00522 730 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 228 730 - -
Lsi03g00522 730 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 19 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00522 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - csv:101222304 837.025
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01516 Lsi-Chr3:26173837 Lsi03g00522 Lsi-Chr3:6061136 2.18E-42 transposed
Lsi01g00954 Lsi-Chr1:7754241 Lsi03g00522 Lsi-Chr3:6061136 1.08E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g606 . . . . . Bpe12g00294 . . . Cmo11g01384 . . . . . Cpe04g00296 Cpe15g00475 . . . . . . . Cla02g00625 . Cec02g0662 . . Cmu02g0661 . . . Cone3ag0992 Cone10ag1013 Lsi03g00522 Csa07g00734 . Cme01g00074 . . Bda15g00847 Bda14g01451 . . Bma03g01356 Bma08g00514 . . . Cma11g01730 Cma19g00587 Car11g01110 . . . . . . . . . . . . . . . . . . . Chy01g00080 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi02g01949 . 90 390 Protein tyrosine phosphatase (PTP) family AT1G71860 62.6 6.4e-109 391.0
Lsi06g01680 . 7 913 Protein tyrosine phosphatase (PTP) family AT5G23720 64.8 0.0e+00 1092.8
Lsi11g01661 . 1 192 Protein tyrosine phosphatase (PTP) family AT2G04550 67.2 4.2e-67 251.1
Lsi04g00121 . 96 317 Protein tyrosine phosphatase (PTP) family AT3G52180 58.0 1.2e-84 310.1
Lsi04g01038 . 29 275 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 8.5e-107 383.6
Lsi03g01385 . 139 540 Protein tyrosine phosphatase (PTP) family AT3G01510 72.4 5.2e-183 637.5
Lsi10g01569 CCT 9 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.9 1.0e-74 276.9
Lsi11g01669 CCT 28 213 Protein tyrosine phosphatase (PTP) family AT2G32960 56.5 3.0e-58 222.2
Lsi06g00702 . 44 215 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 5.3e-55 211.5
Lsi11g00210 . 20 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.9 1.3e-80 297.0
Lsi07g01277 . 23 282 Protein tyrosine phosphatase (PTP) family AT2G35680 57.3 6.2e-80 294.7
Lsi11g00210 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 9.5e-46 180.3
Lsi10g01569 CCT 18 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.6 7.6e-78 287.0
Lsi06g00702 . 58 215 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.4e-58 223.0
Lsi11g01669 CCT 37 214 Protein tyrosine phosphatase (PTP) family AT4G03960 55.8 1.8e-55 212.6
Lsi06g00702 . 52 241 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 2.4e-79 292.0
Lsi10g01569 CCT 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 1.3e-56 216.5
Lsi04g00858 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 66.1 2.5e-63 240.7
Lsi03g01516 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.9 3.1e-158 555.1
Lsi03g00522 . 14 730 Protein tyrosine phosphatase (PTP) family AT3G19420 52.3 1.4e-191 666.4
Lsi01g00954 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 50.7 7.1e-159 557.8
Lsi01g00954 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 51.3 2.6e-148 522.7
Lsi06g01160 . 3 1212 Protein tyrosine phosphatase (PTP) family AT5G58160 54.5 1.5e-288 989.6
Lsi06g01445 CCT 21 376 Protein tyrosine phosphatase (PTP) family AT5G58160 62.9 1.2e-115 415.2
Lsi06g01444 . 1 318 Protein tyrosine phosphatase (PTP) family AT5G58160 60.1 5.3e-108 389.8
Lsi08g00665 . 3 859 Protein tyrosine phosphatase (PTP) family AT3G10550 61.0 4.5e-289 990.7
Lsi08g00665 . 4 859 Protein tyrosine phosphatase (PTP) family AT5G04540 58.9 6.3e-275 943.7
Lsi10g01181 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 65.0 3.8e-69 258.5
Lsi07g01214 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 2.0e-109 392.5
Lsi01g01523 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 60.6 1.1e-245 846.3
Lsi01g01523 . 5 669 Protein tyrosine phosphatase (PTP) family AT5G01290 56.6 1.6e-220 762.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00522 Lsi_Chr03 FPKM 5.654708 6.505084 7.20973 6.848481 16.067204 13.463087 15.820425 10.646445 11.048721 10.942717