Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00524 ATGAAGAAGATGGCTTTGCACTCAAATAAACACAGAACCCAACGCCTCCATAACTCTCTCTTCTTCTTCGACTTCCTCCACTGCACTGAACAACAACACCTTCAAACAGAGCATCCCATTTTCCTTAACAATGGGGGCACCAACGACTTCCCTCTTTTCCAACAAACAACCACCCATTTCCTTGTTTACGAAGACGAGGAGCTCAATCATTTGTTGTCCAAAGAAAAGGACCAAAATCTCCAAACCGGTGCTGTTTTGAAAACCTTGGTTCAAACAGATAATGCTCTGTCTCTCGCTAGAACAGAGGCCATCGACTGGTTGCTTAAAGTTAATGCCTTTTATGGTTTCTCCTCTCTCACAGCTCTCTTAGCCATTAATTACCTCGATAGAATCCTCTCTGGTCCCTATTTTCAAAGAGATAAGCCATGGATGCTTCAGCTTCTTGCTGTAACTTGCATCTCTTTAGCTGCTAAAGTCGAAGAAATTCGTGTCCCTCTTCTTCTAGACCTCCAGGTGGAAGATTCAAAGTACATTTTTGAAGCGAAAACGATACAGAGGATGGAGCTTTTAGTGCTTACTGCTCTGCAATGGAAGATGCACCCAGTGACCCCTGTTTCGTTTCTTGGCATTATCACAAAAGGACTTGGAATGAAGAATCAGTACATTCAAAGAGAGTTTCTTAGACGCTGTGAGCGTATTCTTCTCTCTCTCGTCTCTGATTCGAGATCGGTGGGGATTCTTCCTTCTATAATGGCGGTATCAGCAATGGTGAGCGTTGTTGAAGAGATGGGAAACTGTAACCCATTGGAGGAGTTTCAGGATCAGCTTCTTAATGCCCTCAAAATAAATAAGGGGAGAGTGAAGGAGTGTTGTAAAGTGATAATGGAGGCAAAAATAAAAGGATCAGGGAAGAGGAAGCATGTGGAGGAGGAAGCAGAAGCAGAAGCAGAATCAGAATCATCAGAAGCAGAAACAGAGGGAGAAGCAGAAGCAGAAGCAGGGAGCCCAAATGGAGTAATGGAGGCTAATTTCAGCTGTGAAAGCTCCAACGATTCGTGGGAAATGGGGACGATTGTGTCAGAATACACACATTTTTCTTCTTCTTCTTCTTCTTCTTCCAAAAGAATCAGACCCACTCGATGA 1143 43.57 MKKMALHSNKHRTQRLHNSLFFFDFLHCTEQQHLQTEHPIFLNNGGTNDFPLFQQTTTHFLVYEDEELNHLLSKEKDQNLQTGAVLKTLVQTDNALSLARTEAIDWLLKVNAFYGFSSLTALLAINYLDRILSGPYFQRDKPWMLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKYIFEAKTIQRMELLVLTALQWKMHPVTPVSFLGIITKGLGMKNQYIQREFLRRCERILLSLVSDSRSVGILPSIMAVSAMVSVVEEMGNCNPLEEFQDQLLNALKINKGRVKECCKVIMEAKIKGSGKRKHVEEEAEAEAESESSEAETEGEAEAEAGSPNGVMEANFSCESSNDSWEMGTIVSEYTHFSSSSSSSSKRIRPTR 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6105614 6108737 + Lsi03G005240.1 Lsi03g00524 658274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00524 380 CDD CYCLIN 100 192 IPR013763 -
Lsi03g00524 380 Pfam Cyclin, C-terminal domain 202 303 IPR004367 -
Lsi03g00524 380 ProSitePatterns Cyclins signature. 100 131 IPR006671 -
Lsi03g00524 380 Gene3D - 69 292 - -
Lsi03g00524 380 SMART Cyclin_C_2 202 322 IPR004367 -
Lsi03g00524 380 Pfam Cyclin, N-terminal domain 73 199 IPR006671 -
Lsi03g00524 380 MobiDBLite consensus disorder prediction 302 350 - -
Lsi03g00524 380 Gene3D - 81 200 - -
Lsi03g00524 380 PANTHER CYCLIN-D3-1 36 362 - -
Lsi03g00524 380 PANTHER CYCLINS 36 362 IPR039361 -
Lsi03g00524 380 SMART cyclin_7 105 193 IPR013763 -
Lsi03g00524 380 MobiDBLite consensus disorder prediction 314 329 - -
Lsi03g00524 380 SUPERFAMILY Cyclin-like 59 200 IPR036915 -
Lsi03g00524 380 Coils Coil 304 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00524 Lsi-Chr3:6105614 Lsi08g01007 Lsi-Chr8:18603898 1.19E-42 dispersed
Lsi01g00952 Lsi-Chr1:7729034 Lsi03g00524 Lsi-Chr3:6105614 5.14E-75 wgd
Lsi03g00524 Lsi-Chr3:6105614 Lsi04g01520 Lsi-Chr4:22842315 1.19E-75 wgd
Lsi03g00524 Lsi-Chr3:6105614 Lsi05g00231 Lsi-Chr5:3074203 3.48E-88 wgd
Lsi03g00524 Lsi-Chr3:6105614 Lsi08g01495 Lsi-Chr8:23110265 9.86E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00524 K14505 - csv:101222066 574.704