Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00526 ATGAAGCAACTACTAGTAGTGTACTTAGTACTGTTCACAATTTCCTCCGCCGTCGCCGCCGCCGCAACTCCTTACCTTTCCGAAGAAATTGACCGACCGCCGTCCAGCAGTGACGACAACCTCATCCCAATCCGTAGAGAGGTTTACGGCAATGGCCGAATCTTCGATATCACTCACCGGTACTCCCCTGAGACGCCCTGTTGGGACTACCAGGAAAACGGGCTCGGCCAGTTCGTCTGGCTCACAAGGACCATGAAGAACGGCTCCGAAGCCAATTTCTCCGAGTTTAAGCTTCCGAATCATGCCGGCACGCACGTCGACGCTCCTGGTCACATGTTTGATCATTACTTCGATGCCGGATTCGATGTCGATACGCTCGATTTGGGAGTGCTCAATGGTCCTGCTCTGTTGGTGGATGTACCAAGGGGCACAAATATAACAGGACTTGATTACTTGTCAGTAGCAGCTGATGATGACCTGGTTCCAGCTCATCTTGAGTTTCTGGAAAGCAGAATTCTGAGGTTTGAATCAAGGCATCATGACAATCCTTCATCTTTCAAATTATGGAGAAACTCCCAAACAGCAACCAATAATCTTCCTCCAACAAATTCCTCCGGAGCTCTGCCGATCATGAATCTCCGGTTACCGTTTCTCCTCTTCCTTTTGTTTCAGGCCCTTCCCGGTCTCCTCCTAGCCGCCGCTTCCACTACAGCCTACCCCTCCGTCGTCGATACAGAAGCCACTGATTGCTCACTTTCCGACGGCAGCCTCACTCCTATTCGCCGGGAGGTGTACGATAATGGACGAATCATCGACATCAGTCATCGGTTCACTACAGATATGCCGGCTTGGGAATCTGACCAAGGGCTTGGCCAGTTCCTCTGGCTTCCCAAGAGCATGAAGAATGGCTCGCTTGCTAATAATTCTGAAATGAAGCTTCCCGCTCATACTGGCACTCACGTCGATGCGCCTGGTCATGTTTTTGATCACTACTTCGACGCCGGTTTCGATGTTGACACACTCGATCTGGAAGTTCTTAATGGTCCTGGACTGTTGGTGGACGTTCCAAGGGATAAGAACATTACTGCTGAGGTCATGAAGTCATTAAGTATTCCCAAAGGAGTTCGTCGTGTACTCTTCAGAACATTAAATACAGACAGACGTCTCATGTGGAAAAGGGAGTTTGACACAAGCTATGTGGGATTTATGAAAGATGGGGCAAAATGGCTTGTAGAGAACACTGATATCAAACTAGAAACCATTCTCGTCGAAGGTTTAAAGCTTGATGGCGTCCAGCCCGGATTATATTCTATCCATTGCTTACCTCTTAGGTTGCTTGGTGCTGAAGGGTCGCCTATCAGATGCATTCTAATTAAGTAG 1380 48.84 MKQLLVVYLVLFTISSAVAAAATPYLSEEIDRPPSSSDDNLIPIRREVYGNGRIFDITHRYSPETPCWDYQENGLGQFVWLTRTMKNGSEANFSEFKLPNHAGTHVDAPGHMFDHYFDAGFDVDTLDLGVLNGPALLVDVPRGTNITGLDYLSVAADDDLVPAHLEFLESRILRFESRHHDNPSSFKLWRNSQTATNNLPPTNSSGALPIMNLRLPFLLFLLFQALPGLLLAAASTTAYPSVVDTEATDCSLSDGSLTPIRREVYDNGRIIDISHRFTTDMPAWESDQGLGQFLWLPKSMKNGSLANNSEMKLPAHTGTHVDAPGHVFDHYFDAGFDVDTLDLEVLNGPGLLVDVPRDKNITAEVMKSLSIPKGVRRVLFRTLNTDRRLMWKREFDTSYVGFMKDGAKWLVENTDIKLETILVEGLKLDGVQPGLYSIHCLPLRLLGAEGSPIRCILIK 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6171094 6183236 - Lsi03G005260.1 Lsi03g00526 658276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00526 459 Gene3D Putative cyclase 49 198 IPR037175 GO:0004061|GO:0019441
Lsi03g00526 459 Gene3D Putative cyclase 419 458 IPR037175 GO:0004061|GO:0019441
Lsi03g00526 459 Gene3D Putative cyclase 264 418 IPR037175 GO:0004061|GO:0019441
Lsi03g00526 459 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 4 147 - -
Lsi03g00526 459 PANTHER CYCLASE-LIKE PROTEIN 2 4 147 IPR007325 GO:0004061|GO:0019441
Lsi03g00526 459 PANTHER CYCLASE-LIKE PROTEIN 2 147 176 IPR007325 GO:0004061|GO:0019441
Lsi03g00526 459 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 419 459 - -
Lsi03g00526 459 Pfam Putative cyclase 271 418 IPR007325 GO:0004061|GO:0019441
Lsi03g00526 459 Pfam Putative cyclase 55 146 IPR007325 GO:0004061|GO:0019441
Lsi03g00526 459 SUPERFAMILY Putative cyclase 268 458 IPR037175 GO:0004061|GO:0019441
Lsi03g00526 459 SUPERFAMILY Putative cyclase 52 176 IPR037175 GO:0004061|GO:0019441
Lsi03g00526 459 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 215 418 - -
Lsi03g00526 459 PANTHER KYNURENINE FORMAMIDASE-LIKE ISOFORM X1 147 176 - -
Lsi03g00526 459 PANTHER CYCLASE-LIKE PROTEIN 2 419 459 IPR007325 GO:0004061|GO:0019441
Lsi03g00526 459 PANTHER CYCLASE-LIKE PROTEIN 2 215 418 IPR007325 GO:0004061|GO:0019441
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00526 - - - csv:101221830 442.965
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00526 Lsi03g01043 CCT
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g613 . . . . . . . . . Cmo11g01388 . . . . . Cpe04g00300 . . . . . . . . Cla02g00629 Cam02g0663 Cec02g0667 Cco02g0691 Clacu02g0671 Cmu02g0665 Cre02g0984 . . . . Lsi03g00526 Csa07g00729 . Cme01g00079 . . . Bda14g01456 . . Bma03g01359 . . . . . . Car11g01114 . . . . . . . . . . . . . . . . . Lsi03g01043 . Chy01g00085 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002722 3 2 2 2 2 2 1 2 2 2 1 2 0 2 2 1 2 2 1 2 2 2 2 2 2 1 2 3 4 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00526 Lsi_Chr03 FPKM 0.0 0.0 0.0 0.0 2.771246 3.597618 3.622499 0.0 0.0 0.0