Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00531 ATGTTGCCCACAGCTTCCAGAGGGCGCTCCTCGTCCTCTTCATCCCGAGCTAATCCCATGTATCTACAGTACCTTCGTCGAATTGTCAAGGTCTCAATTCTTGCTGAAACTAAGAATCAGTGGGCACGTGACGATCCTGCTTTTGTTGTGATCTGCAGTCTTCTATTGGCAGTTGCGACTCTGGCTTACTGTGCTGCATATGATCATAGTGCTGCACATGCCTCTTTTGTAGTTATTTCTGTACTGCTCTTCCATTTGCTAATAACTGGGGCGATTTTGGCAACTTGTTGTTGGCTCTATGCATTTGATGTGCACTGCAATTCTTTCTTCCCAATGTTTGTTTTGCTTTATGGTACTGATCCATTACTTTATATCACCGCTTCTGGTGGCCCATGGCTTCATTCCATTATTGCTATCAAATTTGCTTTTCATGTTTGGGGCTTCGTATTACCATTATATCAACTTTTTAGTATTGCCATTTTTGGAGAAAACTACATTCTTCCTCTATCCAATTGGTGTGGTCTTTGTCCTTACTCCAATCTTCATCTTGATCGGCTTCAACCCTTCAAGATATTTCATGAATATGTACTTTAG 594 41.58 MLPTASRGRSSSSSSRANPMYLQYLRRIVKVSILAETKNQWARDDPAFVVICSLLLAVATLAYCAAYDHSAAHASFVVISVLLFHLLITGAILATCCWLYAFDVHCNSFFPMFVLLYGTDPLLYITASGGPWLHSIIAIKFAFHVWGFVLPLYQLFSIAIFGENYILPLSNWCGLCPYSNLHLDRLQPFKIFHEYVL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6255917 6263192 + Lsi03G005310.1 Lsi03g00531 658281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00531 197 PANTHER BNAA07G03880D PROTEIN 98 120 - -
Lsi03g00531 197 PANTHER BNAA07G03880D PROTEIN 1 31 - -
Lsi03g00531 197 PANTHER BNAA07G03880D PROTEIN 36 99 - -
Lsi03g00531 197 PANTHER PROTEIN UNC-50 HOMOLOG 1 31 IPR007881 -
Lsi03g00531 197 Pfam UNC-50 family 34 99 IPR007881 -
Lsi03g00531 197 Pfam UNC-50 family 98 139 IPR007881 -
Lsi03g00531 197 PANTHER PROTEIN UNC-50 HOMOLOG 98 120 IPR007881 -
Lsi03g00531 197 PANTHER PROTEIN UNC-50 HOMOLOG 36 99 IPR007881 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00531 - - - csv:101220418 187.193
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g625 Blo02g00844 . . Bda08g00755 . . Bma05g00530 . Cmo19g00595 Cmo11g01392 . . . . . Cpe04g00304 Cpe15g00467 . . . . . . . . . . . . . . . . Cone3ag1001 Cone10ag1020 Lsi03g00531 . . . . . . . . . . . . . . . Cma19g00580 Car11g01118 Car19g00441 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006089 2 1 2 3 3 0 2 1 1 1 1 0 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00531 Lsi_Chr03 FPKM 9.223672 8.239308 15.430754 15.624788 10.307906 8.691685 10.183017 20.065672 20.529348 23.536249