Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00532 ATGGGAAGCGTTGAAGGAGAAAGAACAGCAACAGGATTTGCAGCAAGAGATCCATCTGGGTTTCTCTCTCCATACACTTACGAACTCAGAGAAACAGGGCCAGAGGATGTTTACATAAGAGTTATATGCTGTGGGCTTTGTCATACTGATATTCATCAGATCAAAAACGAGCTCGGAATGTCTAATTATCCCATGGTTCCAGGGCATGAAGTGGTTGGTGAAGTGGTGGAAATTGGGAAGAATGTGAAGAGATTTAAAGTGAAGGATGTTGTGGGAGTTGGATGCATAGTTGGATCTTGCAAAACTTGCAAGCGATGTGAAACTGATAGAGAACAATATTGCAATAACAAAATTTGGACTAATAATGATGTCTATACCGACGGTAGGCCCACTCAAGGCGGCTTCGCCAGCGCCATGGTCGTCGATCAAAAGTTTGTGGTGAAGGTACCAGATGGAATGGCACCAGAGCAGGCGGCAGCACTGCTATGCGCCGGCGTGACGGTGTACAGTCCATTGAACCATTTTGGGCTGAAGAAAAGTGGGCTAAGAGGAGGGATCTTAGGCCTTGGAGGAGTTGGGCACATGGGGGTGAAACTGGCAAAGGCATTGGGCCATCATGTCACAGTCATAAGCTCCTCCAACAAGAAGAGGGAAGAAGCTCTAGACCATCTCGACGCTGACGACTACCTCGTTAGCTCCGACGAGGCTCAGATGCAACAGGCCATCGACTCCCTTGACTACATCATCGACACCGTGCCGGCCTTTCACCCTCTCGAGCCTTATCTTTCATTGCTCAAGCTCGATGGCAAGTTGATCATGTTGGGTGTTATTAATAACCCTCTCCAATTCGTCTCTCCCATGGTCATTCTTGGTGAGTTTCTTTGTTATCTTCAATCCTCACTGAACTCCATAGGGCGGAAGACGATCACGGGAAGCTTCATAGGGAGCATGAAGGAGACACAGGAAATTTTGGATTTTTTCAAAAAGAAGGAATTGAGTTCAATGGTGGAAGTGGTGAAGATGGATTACATAAACAAAGCCATTGAAAGGTTGGAGAAGAATGATGTTAGATACAGGTTTGTTGTGGATGTTGAAGGAAGCAAGTTTTAA 1110 46.13 MGSVEGERTATGFAARDPSGFLSPYTYELRETGPEDVYIRVICCGLCHTDIHQIKNELGMSNYPMVPGHEVVGEVVEIGKNVKRFKVKDVVGVGCIVGSCKTCKRCETDREQYCNNKIWTNNDVYTDGRPTQGGFASAMVVDQKFVVKVPDGMAPEQAAALLCAGVTVYSPLNHFGLKKSGLRGGILGLGGVGHMGVKLAKALGHHVTVISSSNKKREEALDHLDADDYLVSSDEAQMQQAIDSLDYIIDTVPAFHPLEPYLSLLKLDGKLIMLGVINNPLQFVSPMVILGEFLCYLQSSLNSIGRKTITGSFIGSMKETQEILDFFKKKELSSMVEVVKMDYINKAIERLEKNDVRYRFVVDVEGSKF 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6272532 6276031 - Lsi03G005320.1 Lsi03g00532 658282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00532 369 Gene3D - 14 363 - -
Lsi03g00532 369 PANTHER ALDEHYDE REDUCTASE 4 368 - -
Lsi03g00532 369 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 155 332 IPR036291 -
Lsi03g00532 369 Gene3D - 164 334 - -
Lsi03g00532 369 SMART PKS_ER_names_mod 20 362 IPR020843 GO:0016491
Lsi03g00532 369 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Lsi03g00532 369 Pfam Zinc-binding dehydrogenase 191 328 IPR013149 -
Lsi03g00532 369 CDD CAD1 11 363 - -
Lsi03g00532 369 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 4 368 - -
Lsi03g00532 369 Pfam Alcohol dehydrogenase GroES-like domain 35 149 IPR013154 -
Lsi03g00532 369 SUPERFAMILY GroES-like 16 181 IPR011032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00532 Lsi-Chr3:6272532 Lsi10g00699 Lsi-Chr10:9771521 2.87E-119 dispersed
Lsi04g01768 Lsi-Chr4:24917137 Lsi03g00532 Lsi-Chr3:6272532 1.81E-93 transposed
Lsi09g00111 Lsi-Chr9:1051318 Lsi03g00532 Lsi-Chr3:6272532 2.03E-82 transposed
Lsi01g00180 Lsi-Chr1:1747968 Lsi03g00532 Lsi-Chr3:6272532 2.65E-19 transposed
Lsi03g00532 Lsi-Chr3:6272532 Lsi05g00239 Lsi-Chr5:3151036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00532 K00083 - csv:101214622 622.854