Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00533 ATGGGCTATTCCACCCTAGCCTTGAGTAACACCACCGAAACCGTATCCCAACAGAAGAATGAGAAGGGAAGCAATAGATGGTTCACGTTACCTCCATACACTCCGACTGTAAATGGCTCGGTTTTAGGTAATCGCATACTGAACAGAGGAGCTCAAGCCGAAGAAGAAACTTCCATCACTGCAATCACTGCTCTGAAATGGGTGATTCGCTGCTGCCCGGAGCTGCCGAGGAGTCTCGTGCAAAAGCTTTTTCGACTGAGAAAGGTTGCAGCCAAGGACATTCTGAACATAGGCGATCAAATTTTTCTCCCCATCTCCATTCAAGTATTTCCCACAGAGAAAGCTCGGGATTATTGCAATAAAGAAGAAGAGAAATTCATACATAGTCTAGATCCAGCAATACTTGTTATCAATAAACCTCCTGGCTTGCCCGTACAGGGTGGTATTGGTGTCAAAAGAAGTTTAGATGAATTGGCTGCAAGTTGTTTAAGTTATGACTACTCAGAACCACCTCGGCTAGTACACAGGCTTGACAGGGACAGCAGTGGCATCTTGATAATGGGCAGGACTTCCACAAGTACTTCAGTTCTTCATTCTGTCTTCCGTGAGAAAACTTTTGAGGCATCAAAACATGCAAACCATGCTGATAGTGAGAAAAAGATTTTGCAAAAGAGGTATTGGGCACTTGTAATTGGTTCTCCTAGACGTTCAAAGGGGTTGATTACAGCCCCACTAGGAAAGATTGTGTTGGATGATGGAAGATCTGAGCAAATTATGGTCATTGACAATCACAATGCCGAATCTATGCCTTTTCAGCAAGCAATTACTAGATATAAAGTGATAAAATCTCATCATGGATACACTTGGTTGGAGTTGTGTCCCCTCACTGGAAGAAAACATCAGCTTCGTGTACACTGTGCTGAGGTATTAGGAACGCCTATAGTTGGAGACTACAAATATGGGTGGCAAGCACATAGAAATTGGAAACCATTTCATTCTAATTTCCACAAGAATGAAGGAAAGAAACAATCCCTCCCTTTTGGTCTTAACCTTGAAAGTGGAAGTATTGCAGAAAATAACCCTCGCCTACACCTTCATTGTAAGCAACTGACTTTACCAGATGTTTCTTGCGCACTGCATAATGATTCTCTAGATCATGACTGCTCGAGATTGGAATGTCTGGAGTTGGATGCTGCTTTGCCTTCATACATGCAAAGAAGTTGGGATATCATAAATAATTAG 1242 42.51 MGYSTLALSNTTETVSQQKNEKGSNRWFTLPPYTPTVNGSVLGNRILNRGAQAEEETSITAITALKWVIRCCPELPRSLVQKLFRLRKVAAKDILNIGDQIFLPISIQVFPTEKARDYCNKEEEKFIHSLDPAILVINKPPGLPVQGGIGVKRSLDELAASCLSYDYSEPPRLVHRLDRDSSGILIMGRTSTSTSVLHSVFREKTFEASKHANHADSEKKILQKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNHNAESMPFQQAITRYKVIKSHHGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRNWKPFHSNFHKNEGKKQSLPFGLNLESGSIAENNPRLHLHCKQLTLPDVSCALHNDSLDHDCSRLECLELDAALPSYMQRSWDIINN 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6299362 6304309 - Lsi03G005330.1 Lsi03g00533 658283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00533 413 CDD PseudoU_synth_RluA_like 134 372 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi03g00533 413 Pfam RNA pseudouridylate synthase 134 307 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi03g00533 413 SUPERFAMILY Pseudouridine synthase 127 375 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lsi03g00533 413 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 80 411 - -
Lsi03g00533 413 MobiDBLite consensus disorder prediction 1 22 - -
Lsi03g00533 413 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 80 411 - -
Lsi03g00533 413 Gene3D Pseudouridine synthase 119 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00533 - - - csv:101214863 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00533 Lsi-Chr3:6299362 Lsi08g00929 Lsi-Chr8:17691076 1.98E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g630 . . . . . . . . Cmo19g00594 . . . . . . . Cpe15g00466 . . . . . . . Cla02g00636 Cam02g0669 Cec02g0677 Cco02g0699 Clacu02g0677 Cmu02g0671 Cre02g0992 . . . . Lsi03g00533 . . . . . . . . . Bma03g01362 . . . . . Cma19g00579 . Car19g00439 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012254 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00533 Lsi_Chr03 FPKM 3.4 5.053572 0.0 0.23264 0.481129 0.0 0.232687 0.0 0.0 0.0