Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00535 ATGAACATGACTTCTAAACAACCTCCTTCCCATGTCTTCCTAGTGTGTTATCCTGGCCAAGGACATATCAATCCCACTCTCAGACTAGCCAAGAAACTCGCCGCCGACGGCTTTCTCGTCACCCTTTGCACGGCGGCGCACTTCGGCCAAACACTGCAGAAAGCCGGAAGTATCCCCGGCGGCAGCGACCAACCCACTCCGGTCGGTAATGGCTTCATCAAATTCGAATTTTTTGAAGATGGCCTCAGAGAGATTAATCCCAAGGAAATGAACTTGGGCCGCTTCGTCGCCCAGCTTGAGCTCTCCGGCCGGCCATCGCTTATCGGTCTGATCAAGAACCAAACTGCCGAAAAGTGTCCGGTTTCTTGCCTGATCTTGAACCCTTTTTTGCCATGGACTTACGAAGTTGCAGAGAAGCTTCAAATCCCCTGTGCCATTCTTTGGGTTCAATCTTGCGCTGTGTTCTCAATTTACTATCATCATTTCCACAAATCCGCCTCGTTTCCTTCTGAAATTGAACCCAAAATCGATGTTCAGCTCCCGATTTTACCACATCTGAAGAACGATGAAATCCCGAGCTTCTTGCATCCCAATAACATCTATGGTGTTTTGGGAAAAACTCTGTCATTCCAAATTGATAAATTATCAATACCCTTTTGTATTTTAATGGATACTTTCGAAGAACTCGAGAAGGGAATCATCGATTACATGTCGAAAATCATTCCCTTGAAACCCATTGGCCCATTGTTCTTAAATTCCCAAAAATTAGAAACAGAGGTCTCTGGTGACTTCCTAAAAGCAGAGGATTGTATGGAGTGGTTAAACTCAAAGCCCCCACAATCCGTCGTCTACGTTTCATTTGGAAGTGTAGTTTACTTGAAACAAGAGCAAATAGATGAGCTTGCTTATGGGCTTTGCAATTCAGGATTCTCATTTTTATGGGTCCTGAAACCGCCGTCTGAATTTTTCGATTTAAAACGCCATATTTTGCCAGAAGAGGTTCTGAAAAAAACAGGGGAGAGGGGAAAAATAGTGCAATGGAGCTCGCAAGAGCTGGTTTTGTCGCATGAATCTGTTGGGTGCTTTGTGACACACTGTGGGTGGAATTCGTCGGTGGAGGCTGTCGCCAACGGCGTGCCGGTGGTGGCGTTCCCGCAGTGGGGGGATCAAGTGACCAACGCAAAGTTTCTGGTGGAGGAATATGGAGTTGGAGTGAGGGTGTCGCGTGGAGCAGAGGCAAATGAGTTGATTACGAGGGATGAGATCCAGAGATGTTTGTCGGAAGTGATGATCGGCGGCAGTGGGGAGAGTAAATTCAGGCAAAATGCTTTGAAATGGAAGAAGGCAGCAGCGGCGGCTGTGGCGGACGGCGGCTCCTCCGCCCGTAATTTTCAAGAGTTTGTTGATGAGATTAGACACAGATCATTGAAAGGTTAA 1437 47.04 MNMTSKQPPSHVFLVCYPGQGHINPTLRLAKKLAADGFLVTLCTAAHFGQTLQKAGSIPGGSDQPTPVGNGFIKFEFFEDGLREINPKEMNLGRFVAQLELSGRPSLIGLIKNQTAEKCPVSCLILNPFLPWTYEVAEKLQIPCAILWVQSCAVFSIYYHHFHKSASFPSEIEPKIDVQLPILPHLKNDEIPSFLHPNNIYGVLGKTLSFQIDKLSIPFCILMDTFEELEKGIIDYMSKIIPLKPIGPLFLNSQKLETEVSGDFLKAEDCMEWLNSKPPQSVVYVSFGSVVYLKQEQIDELAYGLCNSGFSFLWVLKPPSEFFDLKRHILPEEVLKKTGERGKIVQWSSQELVLSHESVGCFVTHCGWNSSVEAVANGVPVVAFPQWGDQVTNAKFLVEEYGVGVRVSRGAEANELITRDEIQRCLSEVMIGGSGESKFRQNALKWKKAAAAAVADGGSSARNFQEFVDEIRHRSLKG 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6388721 6390157 + Lsi03G005350.1 Lsi03g00535 658285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00535 478 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 269 409 IPR002213 GO:0008194
Lsi03g00535 478 CDD GT1_Gtf-like 11 430 IPR002213 GO:0008194
Lsi03g00535 478 Gene3D Glycogen Phosphorylase B; 15 464 - -
Lsi03g00535 478 PANTHER UDP-GLYCOSYLTRANSFERASE 84A1 9 474 - -
Lsi03g00535 478 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 471 - -
Lsi03g00535 478 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 474 - -
Lsi03g00535 478 ProSitePatterns UDP-glycosyltransferases signature. 347 390 IPR035595 -
Lsi03g00535 478 Gene3D Glycogen Phosphorylase B; 259 452 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00535 - - K23279 csv:101215819 766.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00535 Lsi-Chr3:6388721 Lsi03g00538 Lsi-Chr3:6465524 5.18E-107 dispersed
Lsi03g00534 Lsi-Chr3:6339110 Lsi03g00535 Lsi-Chr3:6388721 0 tandem
Lsi03g00535 Lsi-Chr3:6388721 Lsi03g00536 Lsi-Chr3:6418698 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g633 . . . . . . Bma05g00532 . Cmo19g00593 Cmo11g01394 . . . . . . Cpe15g00465 Bhi05g01106 . . . . . . Cla02g00640 . . . . . . . . . . Lsi03g00535 Csa07g00718 . Cme01g00089 . . . . . . . . . . . Cma11g01721 Cma19g00578 Car11g01120 Car19g00438 . . . . . . . . . . . . . . . . . . Chy01g00097 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000463 3 5 1 1 1 4 5 5 5 4 5 5 4 3 3 5 5 4 4 5 4 3 4 5 5 5 3 5 4 3 118
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00535 Lsi_Chr03 FPKM 23.271446 22.338125 15.294679 15.840375 17.75951 17.675161 17.658081 13.305983 13.000658 13.512152