Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00543 ATGGAGGGTGTTTGGAGTGGGAACTTGACGGCGCCCGGCGGGCTGATTGAAGGGATCGCCGATTACGTACGGCTTAAGTCGGGTTATATTCCGGGGCACTGGGCAGAGCCGGGCGACGGGAAGAGGTGGGACGAAGGCTACGATGTGACGGCGAGGTTTTTGGATTATTTGGAGGGGGTGAAAAGTGGGTTGGTGGCGAAGCTAAACCGGAGGCTGAGAAATGGCTACTCCGCCGATTACTTCCGGCAGTTGTTGGGGAAGCCGGTGGATCAGCTGTGGGCTGAGTATAAGACTAAGGCCAAGTATAGGAATATTGATAAGAAATGCAATAGTTTTGCAATTGAAGTCAATGGAGTTTTTGCCCTACAGCTGTAA 375 52.53 MEGVWSGNLTAPGGLIEGIADYVRLKSGYIPGHWAEPGDGKRWDEGYDVTARFLDYLEGVKSGLVAKLNRRLRNGYSADYFRQLLGKPVDQLWAEYKTKAKYRNIDKKCNSFAIEVNGVFALQL 124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6520437 6521591 + Lsi03G005430.1 Lsi03g00543 658293

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00543 124 Pfam Peptidase of plants and bacteria 5 96 IPR007541 -
Lsi03g00543 124 PANTHER PLANT BASIC SECRETORY PROTEIN (BSP) FAMILY PROTEIN 5 99 - -
Lsi03g00543 124 PANTHER - 5 99 IPR007541 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00543 - - - csv:105434420 208.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00543 Lsi-Chr3:6520437 Lsi03g00545 Lsi-Chr3:6579193 1.56E-53 dispersed
Lsi03g00543 Lsi-Chr3:6520437 Lsi03g00544 Lsi-Chr3:6554481 1.68E-37 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g643 . . . . . . . . Cmo19g00589 . . . . . . . Cpe15g00460 . . . . . . . Cla02g00647 Cam02g0680 Cec02g0693 Cco02g0713 Clacu02g0688 Cmu02g0683 Cre02g1002 . . . . Lsi03g00543 . . . . . . . . . . . . . . . Cma19g00575 . Car19g00434 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001757 1 4 2 2 2 3 2 3 3 4 2 3 2 2 3 1 3 2 2 3 3 1 2 1 2 3 2 1 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00543 Lsi_Chr03 FPKM 15.168215 16.866709 41.397705 41.239525 164.993103 175.570343 161.810806 19.530704 19.944132 20.207857