Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00548 ATGAATTCTGATTCGTCTCGCTCGGCTAATTCCTCCGCCCAGAGATCCAAGCGAATTCTCGACAATTCATCTCCGTCGAACCCTTCCAGTAGCAGTGGCAACAAGAAGAAACGGATCAACCAGAAAACCCTAGGCGTCGCATGGGGAGCCAATTCCATTTCATCCTCTCGCTCCTCTCGCAAATCCCCCTTTTCAGATTTCGGAAGTTATATGGTAGAAAAGAACAGAAAACTTCACAATCAGTTTAACGTTGATGCTTCAAGTGCTTCACGTAGTGGTACGAACTCAGGAAATCAAATATTTCAGGGCGTGTCTATCTTTGTTGACGGTTTCACAATTCCTTCCAGTCAGGAATTGCGGGGTTATATGTTGAAGTATGGTGGAAGATTTGAGAACTATTTTTCAAGACATAGTGTTTCTCATATAATTTGCAGTAATTTACCGGACAGTAAAATAAAGAATCTCAGGTCCTTCAGCAGTGGACTCCCAGTTGTAAAACCCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGCTGGGTTCCTTACCAACTTGATCAGCTTGTAAGTAATCAACCAAGATTATCAGAATTCTTTTCTATGAAAAAAGGTCCGACGCTGGAGAAACCCAAAATTTGTATGACTACTGAAAAGAAATATGGAACAGAGGATTCACTGTCCCTGGTGGCTATGAATTTAAAGGATACCACTTCGTCTAAAGTGAATGAATCGATAGAACATAGAGCAGAGATGCATTTTGATTCTGAAATGAATCTTCAAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAATGATGATTTAGAGGCTACCCATCTAAAGGATACAAATATATTTGATGTAGATGTATCTAGTGAATATAAACAACAAGTTTGTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTAATGTAGAAGTACAGAAAGGGCCAAGCAAAGAAAAATGTAATTATGCAGATGAAGAACCAGGAATTGTTGATGTGGGGCAGAGCAGTGAAGAAAATATATCTAGTTTGCATGGTTTTTCTGCATCATCTCACAATGGTAGCACCAATAATTATCATAGTGATGGATCATCAAGTTCTATGCTGTGGCATTCAACACGTGAGAATCCAGATTTTGTGGAAAATTATTTCAAGAAGTCAAGGCTACATTTCATTGGAACTTGGAGAAATCGTTATTATAAGCGTTTTCCACGGTTTGGGTCCAATCCTGCGACTTCTCATATCAATGGTTCTTCCCATCATCAGTCTGCCACTATTATCCATGTTGACATGGACTGCTTTTTTGTCTCGGTGGTTATTCGAAACATTCCAGAATTTAAGGATAGGCCTATAGCTGTATGCCACTCAGATAATCCTAAAGGAACTGCAGAAATTTCATCTGCAAACTACCCAGCTCGTGGTTATGGAGTCAGAGCGGGAATGTTCGTTAGAGATGCAAAGGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGGTAGCCGATCAGTTCTATGACATATTGCATAAGCGTTGTGAGAAAGTGCAGGCTGTAAGTTGTGATGAAGCATTTTTAGATATCTCGGGCACAAACGAGGTAGATCCTGAGGTATTGGCTTCAGAAATAAGAAAAGAAATTTTTTATACAACAGGATGTACTGCAAGTGCTGGAATAGCTACAAATATGCTAATGGCTCGCCTTGCCACTAAAACTGCAAAACCTGATGGTCAGTGTTACATTCCTCCAGAGAAGGTTGATGATTATTTAGATCCGCTTCCCATCAAGGATCTTCCTGGAATAGGGCATGCCTTAGAGGAGAAGTTGAAGAAAAGAAGTGTTTTGACTTGTGGTCAGCTGCGTACGATATCCAAGGACTCTCTTCAGAAAGACTTTGGATTAAAAACAGGGGAGATGTTATGGAATTATAGTCGGGGGGTGGACGATCGTGCAGTTGGGTTGATCCAGGAAAGCAAATCCATAGGAGCTGAAGTGAACTGGGGTGTTAGGTTCAAGGACTTCAAAGATTGTCAATGCTTTCTCTTGAACCTTTGTAAGGAGGTTTCATTACGGTTGCATGGATGTGGAGTGCAGGGACGCACCTTTACCCTCAAGATTAAAAAACGAAGAAAAGATGCTGATGAACCCACAAAGTATATGGGCTGTGGAGATTGTGAAAACCTGAGCCATTCATTGACGGTTCCTGTTGCCACCGATGACCTGGAAATTCTTCAGAGGATTGCAAAGCAGCTTTTTGGGTTTTTTGTCATAGATGTCAAAGAAATTCGTGGTATTGGTTTACAAGTTTCGAAACTTCAAAATGTGGATATCTCTAAGCAAGGGATGAAAAGAAATTCTTTGGACTCATGGCTTAGTTCATCTGCAACTACGAATCTAGAAAATACTGGTCCTTTGGTAAAGGAAAGGGCTAATGTAGATGATGAGAAACAGTGCGAGTCTGGAAGTTTAGATCAGTTATCTGCTGATCCTATAAGCCATCTGATTCAGATGGACAATAACCAGCACCATTGTGAAGCTTTGAACCCGGTTTCAGCTCCACCTCTGTGCAATCTGGATATTGGAGTTATAAGGAGCCTACCTCCTGAACTCTTTTCCGAGTTAAATGAAATCTATGGTGGGAAACTAATCGATCTCCTAGCTAAAAGCAGAGACAAATATGAAGCTTTCTCCTCTTCTATAAGGGTTCCGTCTCAAGGATCAGGAGGTGATGGACTTACTTTATCAGATATCCAAGGAAACAAAATACAGTCAGAAAATAAGGTTGATTGTACTTACCTTTTTCATAATGTTGAACGTTCACCACCTGCACAGATTTCTGGGGAAGGATTGTGCAATTTGGTGACTTCAATTCCCACCTCTGGATCTCATACAATCGATTTACTACCTTCATCTCTAAGTCAAGTAGATCCATCAGTATTACAAGAGTTACCTGAACCACTGAGGGCTGACATACTTAAGCAACTCCCAGCACACAGGGAAAAAGAGCTTGCTTTGGAATATTCAGGAAAAAATCATCAGGAATCATGCGGTGCTATTGGCAGTACATCTGGCTCAATTGATTCTTTGATGGAAAATGATCTTTGGTCTGGAAACCCACCTCTATGGGTTGGTAAATTTAAAGCCAGCAATTGCTTGATATTAAAATTCCTTGCAGAGGTGTATACAGAGTCAGGGTCACCGGGAAATCTATATGGGATTTTGCTAAGGACATTATCTCAATCTTGGCATCCTTCAACTGCGGATTCTGATGGTTGGGATGGTGCTATCTATGGCTTATGTGAACTTCTTAAGCAGTACTTTAGGTTAAAGATAGAGTTGGACATTGAGGAGACCTATGTTTGTTTTCGTCTGGTTAAGAGGTAA 3411 40.57 MNSDSSRSANSSAQRSKRILDNSSPSNPSSSSGNKKKRINQKTLGVAWGANSISSSRSSRKSPFSDFGSYMVEKNRKLHNQFNVDASSASRSGTNSGNQIFQGVSIFVDGFTIPSSQELRGYMLKYGGRFENYFSRHSVSHIICSNLPDSKIKNLRSFSSGLPVVKPTWILDSVASNKLLSWVPYQLDQLVSNQPRLSEFFSMKKGPTLEKPKICMTTEKKYGTEDSLSLVAMNLKDTTSSKVNESIEHRAEMHFDSEMNLQDNADAELNEKSNDDLEATHLKDTNIFDVDVSSEYKQQVCESFEMLPRKDANVEVQKGPSKEKCNYADEEPGIVDVGQSSEENISSLHGFSASSHNGSTNNYHSDGSSSSMLWHSTRENPDFVENYFKKSRLHFIGTWRNRYYKRFPRFGSNPATSHINGSSHHQSATIIHVDMDCFFVSVVIRNIPEFKDRPIAVCHSDNPKGTAEISSANYPARGYGVRAGMFVRDAKALCPHLVIFPYDFKSYEEVADQFYDILHKRCEKVQAVSCDEAFLDISGTNEVDPEVLASEIRKEIFYTTGCTASAGIATNMLMARLATKTAKPDGQCYIPPEKVDDYLDPLPIKDLPGIGHALEEKLKKRSVLTCGQLRTISKDSLQKDFGLKTGEMLWNYSRGVDDRAVGLIQESKSIGAEVNWGVRFKDFKDCQCFLLNLCKEVSLRLHGCGVQGRTFTLKIKKRRKDADEPTKYMGCGDCENLSHSLTVPVATDDLEILQRIAKQLFGFFVIDVKEIRGIGLQVSKLQNVDISKQGMKRNSLDSWLSSSATTNLENTGPLVKERANVDDEKQCESGSLDQLSADPISHLIQMDNNQHHCEALNPVSAPPLCNLDIGVIRSLPPELFSELNEIYGGKLIDLLAKSRDKYEAFSSSIRVPSQGSGGDGLTLSDIQGNKIQSENKVDCTYLFHNVERSPPAQISGEGLCNLVTSIPTSGSHTIDLLPSSLSQVDPSVLQELPEPLRADILKQLPAHREKELALEYSGKNHQESCGAIGSTSGSIDSLMENDLWSGNPPLWVGKFKASNCLILKFLAEVYTESGSPGNLYGILLRTLSQSWHPSTADSDGWDGAIYGLCELLKQYFRLKIELDIEETYVCFRLVKR 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6629735 6640451 + Lsi03G005480.1 Lsi03g00548 658298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00548 1136 Gene3D - 602 656 - -
Lsi03g00548 1136 ProSiteProfiles BRCT domain profile. 96 187 IPR001357 -
Lsi03g00548 1136 Pfam impB/mucB/samB family C-terminal domain 667 788 IPR017961 GO:0003684|GO:0006281
Lsi03g00548 1136 SUPERFAMILY BRCT domain 69 189 IPR036420 -
Lsi03g00548 1136 Gene3D - 381 412 - -
Lsi03g00548 1136 PANTHER DNA REPAIR PROTEIN REV1 35 1136 - -
Lsi03g00548 1136 Gene3D - 666 789 IPR036775 GO:0003684|GO:0006281
Lsi03g00548 1136 SUPERFAMILY DNA/RNA polymerases 424 661 IPR043502 -
Lsi03g00548 1136 CDD BRCT_Rev1 100 187 - -
Lsi03g00548 1136 Hamap DNA polymerase IV [dinB]. 427 798 IPR022880 GO:0003887
Lsi03g00548 1136 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 666 779 IPR036775 GO:0003684|GO:0006281
Lsi03g00548 1136 CDD PolY_Rev1 383 781 - -
Lsi03g00548 1136 PIRSF REV1 50 1025 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Lsi03g00548 1136 Pfam impB/mucB/samB family 433 580 IPR001126 GO:0006281
Lsi03g00548 1136 ProSiteProfiles UmuC domain profile. 430 611 IPR001126 GO:0006281
Lsi03g00548 1136 Gene3D - 430 591 IPR043128 -
Lsi03g00548 1136 Gene3D - 447 501 - -
Lsi03g00548 1136 Pfam BRCT domain, a BRCA1 C-terminus domain 98 185 IPR001357 -
Lsi03g00548 1136 Gene3D BRCT domain 90 187 IPR036420 -
Lsi03g00548 1136 MobiDBLite consensus disorder prediction 1 41 - -
Lsi03g00548 1136 Pfam IMS family HHH motif 592 620 IPR024728 -
Lsi03g00548 1136 SMART BRCT_7 98 177 IPR001357 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00548 K03515 REV1; DNA repair protein REV1 [EC:2.7.7.-] - csv:101214381 1932.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00293 Lsi-Chr1:2597224 Lsi03g00548 Lsi-Chr3:6629735 0 dispersed
Lsi03g00548 Lsi-Chr3:6629735 Lsi03g00577 Lsi-Chr3:7085616 9.60E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g647 . . . . . . . . Cmo19g00586 . . . . . . . Cpe15g00458 . . . . . . . Cla02g00651 Cam02g0684 Cec02g0698 Cco02g0718 Clacu02g0692 Cmu02g0687 Cre02g1006 . Cone8ag1100 . . Lsi03g00548 Csa07g00711 . . . . . . . . Bma03g01373 . . . . . Cma19g00572 . Car19g00431 . . . . . . . . . . . . . . . . . . Chy01g00104 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010766 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00548 Lsi_Chr03 FPKM 29.341963 31.005905 148.067062 140.935287 5.297388 5.323983 4.647866 16.888456 17.677357 17.566359