Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00552 ATGATGGAAGATAATGAAGAAACAGCAGAATTAACAGATACCCAAAAGCCAGATGAATCAAGTTCAACCAAAATCAATGGAAATGAATCAATAGCAAATGAAAATCTTGCAAAAGGCTGGCTGAATCTGAGTTTGGGTGGGAATTTTCAGCCCTCAAATGGCATAGATTCTGATTCTCAGCCATTGATGAACAAGCCAAATAATTCAGCTGTAAAGATGTTTTCTTGTAACTTCTGTATGAGGAAATTCTACAGCTCACAAGCATTGGGAGGCCACCAAAATGCTCACAAAAGGGAAAGAGGAGCAGCAAGAAGATACCAATTTCAAAGAATAATGGCCATGATGGGTTTGCCTCCGTTAATGAATAATGCTGCTAATTTAATGGTAAGATCTTTATGTGTTAGGCCTCATTCCCTTCTTCTGCAGAGGCCAAACGGAGAACCCCATGGTCATGGAGGATCTGTAGCCACTGTCGCAAGGCTCAAATTCTGTTATGATATTGCCAATTGTATTAGGCGATATGAAAAGAATGGAAGATAA 540 39.44 MMEDNEETAELTDTQKPDESSSTKINGNESIANENLAKGWLNLSLGGNFQPSNGIDSDSQPLMNKPNNSAVKMFSCNFCMRKFYSSQALGGHQNAHKRERGAARRYQFQRIMAMMGLPPLMNNAANLMVRSLCVRPHSLLLQRPNGEPHGHGGSVATVARLKFCYDIANCIRRYEKNGR 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6693062 6694189 + Lsi03G005520.1 Lsi03g00552 658302

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00552 179 PANTHER ZINC FINGER PROTEIN 4-LIKE 3 146 - -
Lsi03g00552 179 Gene3D Classic Zinc Finger 52 115 - -
Lsi03g00552 179 MobiDBLite consensus disorder prediction 1 26 - -
Lsi03g00552 179 PANTHER ZINC FINGER PROTEIN 4-LIKE 3 146 - -
Lsi03g00552 179 SUPERFAMILY beta-beta-alpha zinc fingers 72 100 IPR036236 -
Lsi03g00552 179 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Lsi03g00552 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 101 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00552 - - - cmax:111470983 262.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00937 Lsi-Chr1:7583568 Lsi03g00552 Lsi-Chr3:6693062 6.93E-21 dispersed
Lsi03g00552 Lsi-Chr3:6693062 Lsi05g00247 Lsi-Chr5:3199666 5.42E-29 dispersed
Lsi03g00552 Lsi-Chr3:6693062 Lsi05g00261 Lsi-Chr5:3333039 3.59E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g653 Blo02g00945 . Bda06g01217 Bda08g00665 . . . Bma12g00266 Cmo19g00582 . . . . . . . . . . . . . . . Cla02g00657 Cam02g0692 Cec02g0704 Cco02g0724 Clacu02g0698 Cmu02g0696 Cre02g1011 . . Cone3ag1008 Cone10ag1025 Lsi03g00552 . . Cme01g00099 . . . . . Bpe05g00489 . . . Cmo04g00497 . . Cma19g00568 . Car19g00428 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014613 0 0 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 0 1 0 20
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00552 Lsi_Chr03 FPKM 7.478489 7.586464 11.108525 10.973775 27.713362 29.1926 30.509951 19.162384 18.265896 19.246338