Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi03g00554 | ATGGACCCGCCGGAGTACCACAAGCCATCCGTCCGAACGTCGAAGAAGCGCGACTCGGAGGTGCACTCTTTGCAACAGGCCACTGCCAACAAGAGACCCGCGCTTGGCGAGATCACTAACTCATTGATCTTCAGTTCTAGCCAATGCTCCTTTTCTGATCAGGAGATGACGGATAAGGATCTGGACATGGAGGAACTCCCTGAAGGAAGGTCTGTTGATTGTTCGGAGAAATCTGGCTCTGCATTTAGTATTTATAACCACCTTCGATCTCTGGAGATGGAATTACACATGAAGTTACTACCCAACAACATTGAAAAGGCTCTCAATGGTGATTCCAGTTTAACTTTCACTCGTGTTCGAGAAATTCTAGTGGATTGGTTAGTAGAGGTTGCTGAGGAATACAAGCTTGTATCGGACACCCTATATCTCACCATATCACATATTGACAGATACTTATCCTGGCATGCTATTGACAGAAGCAAGCTACAACTTCTTGGCGTTTGTTGCATGCTAATTGCATCGAAGCATGAAGAGATCAGTCCTCCACATGCTGAAGACTTCTGCTATATAACAGATAATACTTATACCAAAGAACAGGTACTGAATATGGAGAGAGAAGTACGCACATTCTTGACCTGTGAAGGCGCCCCCACGGTAAAAGTTTTCCTCAGGATATTTACAAAAGTTGCTTTAGAAAATTGGAAGGCTCCAGATTTGCAATTTGAGATATTGAGTTGTTATCTTGCGGAGCTAAGTTTGTTAGATCACCGTTGTGTACAAATCTTACCTTCAAAAGTCGCGGCATCAGCCATTTTTCTTTCTAGATTCACAATCCAACCAGAGAAACATCCTTGGTGTTTAGCACTACAACGTTACTCCGGTTACAGGCCATCTGAACTAAAGGAATGCATTCTTGCCATTCATGACTTGCAATTAAATAGAAAAGGAAGCTCTTTACTAGCAATAAGAGACAAGTACAAGCAGCATAAGTTCAAGTGTGTGGCCGAGTTATCTTCTCCCTCAGAAATTCCCGCATATTATTTTGAGGACATTGATCAGCAATTATTCAACAGGTTTTTAAGAACTGCTTAA | 1092 | 42.4 | MDPPEYHKPSVRTSKKRDSEVHSLQQATANKRPALGEITNSLIFSSSQCSFSDQEMTDKDLDMEELPEGRSVDCSEKSGSAFSIYNHLRSLEMELHMKLLPNNIEKALNGDSSLTFTRVREILVDWLVEVAEEYKLVSDTLYLTISHIDRYLSWHAIDRSKLQLLGVCCMLIASKHEEISPPHAEDFCYITDNTYTKEQVLNMEREVRTFLTCEGAPTVKVFLRIFTKVALENWKAPDLQFEILSCYLAELSLLDHRCVQILPSKVAASAIFLSRFTIQPEKHPWCLALQRYSGYRPSELKECILAIHDLQLNRKGSSLLAIRDKYKQHKFKCVAELSSPSEIPAYYFEDIDQQLFNRFLRTA | 363 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6711122 | 6714750 | - | Lsi03G005540.1 | Lsi03g00554 | 658304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi03g00554 | 363 | CDD | CYCLIN | 120 | 207 | IPR013763 | - | |
| Lsi03g00554 | 363 | Pfam | Cyclin, N-terminal domain | 101 | 211 | IPR006671 | - | |
| Lsi03g00554 | 363 | SMART | Cyclin_C_2 | 217 | 340 | IPR004367 | - | |
| Lsi03g00554 | 363 | Pfam | Cyclin, C-terminal domain | 217 | 339 | IPR004367 | - | |
| Lsi03g00554 | 363 | Gene3D | - | 97 | 215 | - | - | |
| Lsi03g00554 | 363 | PIRSF | Cyclin_A_B_D_E | 3 | 347 | IPR039361 | - | |
| Lsi03g00554 | 363 | SUPERFAMILY | Cyclin-like | 217 | 341 | IPR036915 | - | |
| Lsi03g00554 | 363 | PANTHER | CYCLINS | 20 | 350 | IPR039361 | - | |
| Lsi03g00554 | 363 | SMART | cyclin_7 | 221 | 309 | IPR013763 | - | |
| Lsi03g00554 | 363 | SMART | cyclin_7 | 125 | 209 | IPR013763 | - | |
| Lsi03g00554 | 363 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Lsi03g00554 | 363 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Lsi03g00554 | 363 | PANTHER | CYCLIN-A3-1-LIKE | 20 | 350 | - | - | |
| Lsi03g00554 | 363 | SUPERFAMILY | Cyclin-like | 85 | 212 | IPR036915 | - | |
| Lsi03g00554 | 363 | Gene3D | - | 84 | 336 | - | - | |
| Lsi03g00554 | 363 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 288 | 363 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lsi03g00554 | 363 | CDD | CYCLIN | 217 | 308 | IPR013763 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi03g00554 | Lsi-Chr3:6711122 | Lsi08g00456 | Lsi-Chr8:12228253 | 8.54E-80 | dispersed | |
| Lsi03g00554 | Lsi-Chr3:6711122 | Lsi04g01508 | Lsi-Chr4:22713118 | 2.23E-49 | wgd | |
| Lsi03g00554 | Lsi-Chr3:6711122 | Lsi08g01505 | Lsi-Chr8:23165205 | 1.46E-99 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi03g00554 | K06627 | - | csv:101213896 | 638.262 |