Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00563 ATGATGTTGAGGTCGTGTTGCCGGCCGCTCGAGCGGTTTATTGGCCGGTGGAGCGGCGATGGACTGCTCTGGCACTCGGAATTGAAGCCTCATGCCTCTGGTGATTACTCGATCGCTGTTGTTCAGGCTAATTCTTGTCTTGAGGATCAGAGTCAGGTCTTCACGTCTCCTTCTGCTACTTATGTTGGTGTTTATGATGGCCATGGCGGTCCTGAGGCTTCTCGCTTCGTGAATAAGCATCTTTTTCCTTATATGCATAAGTTTGCTTCAGAACAAGGTGGACTATCGGAGGATGTTATTAAGAAGGCATTCAATGCTACAGAAGAAGAGTTTTTGCGTTTGGTTAAGCGGGCTTTGCCTGCAAAGCCACAGATTGCTTCAGTTGGATCATGCTGTCTTGTTGGGGCAATTTCGAATACAAAGTTATACGTTGCGAATCTCGGTGATTCGAGAGCTGTGCTTGGTCGTAGAGGTTCGGAGAGTAAGATAACACCGGTAGTTGCAGAACGGTTGTCCACCGATCACAATGTTGGAGTAGATGAAGTTAGGAAAGAAGTTGTAGCACTTCATCCTGACGATTCCCATATAGTTGTCTATACCCGTGGAGTTTGGAGGATAAAAGGCATAATTCAGGTTTCAAGATCTATTGGCGACGTCTATTTAAAGAAACCAGAGTTCAACCGGGATCCAATATTCCAACAATTTGGGAACCCCGTTCCTTTGAAACGACCAGTAATGACTGCAGAACCATCGATCCTGACACGAGAGCTTAACCCTCAAGACTTATTCCTGATCTTTGCATCAGATGGTCTCTGGGAACAGCTCACTGATGAAGCTGCAGTGGAGATAGTTTTCAAGAACCCAAGAGCTGGAATTGCAAAGAGATTAGTGAGTGCTGCCCTCCACGAGGCAGCAAAAAAACGCGAGATGAGATACTCTGACTTAAAGAAGATCGAAAAGGGGATTCGCCGTCACTTCCACGACGATATCACTGTCATTGTCGTTTATCTCGACCACAACAGAAGCTCACACACGAATCGAGCTAAGAACGCGAACGCCATTGCCGGGTACACTAGTGCACCTGTTGACATTTTTTCTCTTAACTCAAACTATGAAGAAGAGGAAAAACTTCACACAATGTTCTGA 1146 45.9 MMLRSCCRPLERFIGRWSGDGLLWHSELKPHASGDYSIAVVQANSCLEDQSQVFTSPSATYVGVYDGHGGPEASRFVNKHLFPYMHKFASEQGGLSEDVIKKAFNATEEEFLRLVKRALPAKPQIASVGSCCLVGAISNTKLYVANLGDSRAVLGRRGSESKITPVVAERLSTDHNVGVDEVRKEVVALHPDDSHIVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNPVPLKRPVMTAEPSILTRELNPQDLFLIFASDGLWEQLTDEAAVEIVFKNPRAGIAKRLVSAALHEAAKKREMRYSDLKKIEKGIRRHFHDDITVIVVYLDHNRSSHTNRAKNANAIAGYTSAPVDIFSLNSNYEEEEKLHTMF 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6806984 6809623 - Lsi03G005630.1 Lsi03g00563 658313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00563 381 CDD PP2Cc 42 337 IPR001932 -
Lsi03g00563 381 Gene3D - 25 349 IPR036457 -
Lsi03g00563 381 PANTHER ALPHABET, ISOFORM E-RELATED 4 375 - -
Lsi03g00563 381 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Lsi03g00563 381 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 375 - -
Lsi03g00563 381 SUPERFAMILY PP2C-like 42 338 IPR036457 -
Lsi03g00563 381 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Lsi03g00563 381 SMART PP2C_4 25 335 IPR001932 -
Lsi03g00563 381 Pfam Protein phosphatase 2C 56 308 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00563 Lsi-Chr3:6806984 Lsi07g01082 Lsi-Chr7:16190074 5.96E-141 dispersed
Lsi03g00563 Lsi-Chr3:6806984 Lsi10g00506 Lsi-Chr10:7237062 1.11E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00563 - K01102 csv:101216862 721.465