Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00564 ATGACGAGCGCTTCGGAGCTGTTTCATTGTCGGAGGTACAGATTGGGTCGCACTGACGCGGATTTAGGGCTTGATTCTGAGCCTCCCGATCGCCATCTTCAGTATCAACGTCGTCATCATGGTCACAATGGCAATCACCGCCGCGATTTGAACTCCTGTGGCGCTTTCCGGCGGTCCTCGTTGCAAGAACGCCGTCAATCTCCTCGATTTTTTAACCCTCTCTCTGTTGACCGATCGCCTGCGCAGTCTGACTCAGTTACGAGCGTTGGTTCTAGAAATAATATCAATGCAAATACACAGAATAGCTTGAGGACTGGGTTAAGTGGGGATTCCAGATTGCCAGGATCCGTTTTACTTGCTAGAGAAAGGCTTTTGGAGAGATTGAGAGGTGCCTCTTCACCGACGAGCAGGAACGCTCTTGTTGAACCATCAGATGGAAGTCCAGAAATCTCGACAAGTCGATCGCAGAGGATATCCCTTGTTGATACTGACAGGATGCGATTAGTTCCTGCACCCAGCAAGAGGCCCCCTGGTCTCTCACAGGATGCAATCAACCGCTTACAACTCGTGGTATTTATCAATATCATCAACGATGACGTGACTATGACGACAACGTCAAAGGATTGTAGTATATGTCTAGAGAGTTTCACAGATGGAGACAAGCTCATCCATTTACCCTGTGAGCACAAATTTCACCATGCTTGCTTAGACCGATGGATTCGAACTTGTGGAGAATGTCCATATTGTAGACAACATATCGTCGTTAACTAA 771 47.73 MTSASELFHCRRYRLGRTDADLGLDSEPPDRHLQYQRRHHGHNGNHRRDLNSCGAFRRSSLQERRQSPRFFNPLSVDRSPAQSDSVTSVGSRNNINANTQNSLRTGLSGDSRLPGSVLLARERLLERLRGASSPTSRNALVEPSDGSPEISTSRSQRISLVDTDRMRLVPAPSKRPPGLSQDAINRLQLVVFINIINDDVTMTTTSKDCSICLESFTDGDKLIHLPCEHKFHHACLDRWIRTCGECPYCRQHIVVN 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6818230 6821081 - Lsi03G005640.1 Lsi03g00564 658314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00564 256 PANTHER SI:CH211-59O9.10 155 255 - -
Lsi03g00564 256 SMART ring_2 209 249 IPR001841 -
Lsi03g00564 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 254 IPR013083 -
Lsi03g00564 256 MobiDBLite consensus disorder prediction 61 112 - -
Lsi03g00564 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 155 255 - -
Lsi03g00564 256 PANTHER SI:CH211-59O9.10 1 137 - -
Lsi03g00564 256 CDD RING-H2_PA-TM-RING 208 250 - -
Lsi03g00564 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 137 - -
Lsi03g00564 256 MobiDBLite consensus disorder prediction 131 155 - -
Lsi03g00564 256 MobiDBLite consensus disorder prediction 61 109 - -
Lsi03g00564 256 MobiDBLite consensus disorder prediction 129 155 - -
Lsi03g00564 256 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Lsi03g00564 256 Pfam Ring finger domain 208 250 IPR001841 -
Lsi03g00564 256 SUPERFAMILY RING/U-box 208 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00564 - - - cmo:103495299 447.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00564 Lsi-Chr3:6818230 Lsi09g00690 Lsi-Chr9:7832170 2.14E-10 dispersed
Lsi03g00564 Lsi-Chr3:6818230 Lsi04g01830 Lsi-Chr4:25437672 1.28E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g673 . . . . . . . . . Cmo11g01410 . . . . . Cpe04g00318 . . . . . . . . Cla02g00669 Cam02g0703 Cec02g0717 Cco02g0738 Clacu02g0711 Cmu02g0706 Cre02g1021 Cone12ag1054 . Cone3ag1017 Cone10ag1034 Lsi03g00564 Csa07g00697 . Cme01g00109 . . . . . . . . . . . Cma11g01708 . . . . . . . . . . . . . . . . . . . . . Chy01g00119 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012540 0 0 0 0 0 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00564 Lsi_Chr03 FPKM 2.462287 2.360657 4.659292 5.283753 1.090406 1.971542 1.302226 0.0 0.0 0.18264