Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00572 ATGGCGACTTCTTCACTCTCCCATCTCTCTGCTCCACCGTCGTTGGCCATCGACAGCTCAAAGTCTTCCTTCCTCTGCGGTACGCAGCTGCCCTTCCCTTCCTCTCGCTCAAGAACTTCATGTCGCAGATACGTCCTATCTCCCTCCGCCAAACAATCGATGGATCACATTCCTAAGGAGTTTAGAGGAGAAAATCTCAAAGATGGATTGATGGAGAACTACAAGAATGCTCCTAAGTATCTTTATGGCCTTACACCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTCCGGCGGCAGTCAGAATTAGTTACAGAGCAAAACATATCATCTTCCCACAACTACTTGAATCATGGAGGAATGTGGAGTCTATCTGGCATGAATGGGAAGGGTCCATCAAAATATAGTATGAGTGTTAGCATGTATCGTGGGGGAGGAAGAGGAGCTGGACGACCTCGAACAGCTCCTCCTGATTTGCCCTCTTTGCTCTTAGATGCTCGTATATGCTATTTGGGCATGCCTATTGTACCAGCAGTGACTGAGCTTCTTGTTGCTCAGTTTATGTGGCTAGATTATGATAACCCGTCAAAGCCTATATATCTCTACATAAACTCTCCTGGGACACAGAATGAGAAGATGGAGACTGTTGGATCTGAAACTGAAGCATATGCTATAGCAGATATGATGGCTTACTGCAAATCGGATGTCTATACCGTCAACTGTGGAATGGCATATGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGCTACCGTGCTGTCCAACCTAACTCTTCCACTAAACTATATCTACCTAAAGTTAATAGATCAAGTGGTGCGGTCATAGATATGTGGATTAAGGCTAAAGAACTCGATGCCAACACGGAGTACTATCTCGAGCTATTAGCTAAAGGAATTGGTAAACCCAAGGAAGAGATTACTAAAGATGTCCAACGACCCAAATACTTCCAAGCACAAGAAGCTATTGACTACGGCATTGCAGACAAAATAATCGACTCTCGAGATTCCGCATTTGAAAAAAGGAATTACGACGAGATGCTTGCGCAGTCGAGAGCTACGAGGAGAGGACCAGGAGGCAATCCACAAGCAGCACCATCCGGGTTCAGTTTCGCCATTTGTATCAATACCAGTCCAACTTCATTTCATCGGAGCGTCTCCTCGCCGGTTACTGCAATGGTGGTCTGCAAATGCCGCAAGGCCACGAAATTGTATTGTTTTGTTCATAAGGTTCCCGTATGTGGAGAATGCATTTGTTTCCCAGAACACCAAATATGCGTGGTTCGTACCTATTCAGAGTGGGTATTGAATGGAGATTATGATTGGCCTCCAAATTGCTGCCTGTGTCATGCTACACTTGAGGAAGGAGTTGGTCCTCAAACTACTCGATTGGGATGCTTGCATGTCATACATACGGATTGCTTGGTCTCACATATCAAGAGCTTTCCTCCATCCACTGCCCCTGCTGGATATGACTGTCCTGCCTGTTCAGTTTCGACTCTATGCTATTGTTTTGATGTTCTTCTGCGTGATCAATTTTATCGAGTTCCCTTGATTGGTGTGAATATAGTCTCGATAATGGAAACTATGCTATTGTCTCAGATGTCTGAGTACTCTAAGACTGGTCTGGAAAAGAATTTGTTTGGAAATCATCCAGTTGGATTATCACCAACAGAATCCCGTGGTCCTCCCCCTGCCTTTGCCTCAGATCCCTTGGTTTCCTCTTCAGGAGACACACATAACAATAAGAGTTCATTAAATTCAATAGCAAACATTGAGTCAGATCTGGGTGAAGGGTTCTCCGCCACAACTGGAAATGGGTCTTCCAAAAATGACATTGCAGATATTGTAGAGATTGAAATGCCTGGTTCAGAAGGAAATTTTGTGAAAGGCTCAAGTCCTTCAGGCCCTGTTGCTACCACAAGAAAAGGTGCACTCAATTATGACAGGCAAAATTCTGAAATTTCATATTATGCTGATGATGAAGACGGTAATCGCAAGAAGTATGTTCGAAGAGGTCCTTTTAAGCACAAGTTTCTTAGAGCCCTACTTCCTTTCTGGTCAACTGCATTGCCAACTCTACCCGTTACTGCACCGCCTCGTAAAGATGCATCAAATACCAATGATGTCAGTGAAGGTCGTGTTCGGCACCAAAGACCCTCCAGAATGGATCCAAGAAAAATTCTTCTTATCATAGCAATCATGGCATGCCTGGCAACGATGGGTATTTTATACTACAGACTTGTACAAAGAGATATCGGAGAAGAATTTGTGGATGACGAGCAGCAACTGCAAGCAGCACAATGA 2334 44.39 MATSSLSHLSAPPSLAIDSSKSSFLCGTQLPFPSSRSRTSCRRYVLSPSAKQSMDHIPKEFRGENLKDGLMENYKNAPKYLYGLTPSQMDMFMTEDNPVRRQSELVTEQNISSSHNYLNHGGMWSLSGMNGKGPSKYSMSVSMYRGGGRGAGRPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPSKPIYLYINSPGTQNEKMETVGSETEAYAIADMMAYCKSDVYTVNCGMAYGQAAMLLSLGTKGYRAVQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYLELLAKGIGKPKEEITKDVQRPKYFQAQEAIDYGIADKIIDSRDSAFEKRNYDEMLAQSRATRRGPGGNPQAAPSGFSFAICINTSPTSFHRSVSSPVTAMVVCKCRKATKLYCFVHKVPVCGECICFPEHQICVVRTYSEWVLNGDYDWPPNCCLCHATLEEGVGPQTTRLGCLHVIHTDCLVSHIKSFPPSTAPAGYDCPACSVSTLCYCFDVLLRDQFYRVPLIGVNIVSIMETMLLSQMSEYSKTGLEKNLFGNHPVGLSPTESRGPPPAFASDPLVSSSGDTHNNKSSLNSIANIESDLGEGFSATTGNGSSKNDIADIVEIEMPGSEGNFVKGSSPSGPVATTRKGALNYDRQNSEISYYADDEDGNRKKYVRRGPFKHKFLRALLPFWSTALPTLPVTAPPRKDASNTNDVSEGRVRHQRPSRMDPRKILLIIAIMACLATMGILYYRLVQRDIGEEFVDDEQQLQAAQ 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6911665 6925566 + Lsi03G005720.1 Lsi03g00572 658322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00572 777 CDD S14_ClpP_2 160 340 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi03g00572 777 CDD Bbox2 408 433 - -
Lsi03g00572 777 Pfam Clp protease 163 343 IPR023562 -
Lsi03g00572 777 ProSiteProfiles Zinc finger RING-type profile. 455 506 IPR001841 -
Lsi03g00572 777 MobiDBLite consensus disorder prediction 706 728 - -
Lsi03g00572 777 MobiDBLite consensus disorder prediction 559 594 - -
Lsi03g00572 777 Gene3D - 149 348 - -
Lsi03g00572 777 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 46 371 - -
Lsi03g00572 777 PRINTS Clp protease catalytic subunit P signature 319 338 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi03g00572 777 PRINTS Clp protease catalytic subunit P signature 160 175 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi03g00572 777 PRINTS Clp protease catalytic subunit P signature 240 257 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi03g00572 777 PRINTS Clp protease catalytic subunit P signature 200 220 IPR001907 GO:0004176|GO:0004252|GO:0006508
Lsi03g00572 777 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 46 371 IPR023562 -
Lsi03g00572 777 SUPERFAMILY ClpP/crotonase 155 345 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00572 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101215656 635.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00572 Lsi-Chr3:6911665 Lsi07g01130 Lsi-Chr7:16740003 7.53E-28 dispersed
Lsi07g01255 Lsi-Chr7:18346699 Lsi03g00572 Lsi-Chr3:6911665 4.39E-48 transposed
Lsi09g00370 Lsi-Chr9:3854668 Lsi03g00572 Lsi-Chr3:6911665 1.33E-25 transposed
Lsi11g00589 Lsi-Chr11:6245580 Lsi03g00572 Lsi-Chr3:6911665 1.70E-29 transposed
Lsi03g00572 Lsi-Chr3:6911665 Lsi05g00283 Lsi-Chr5:3685879 7.65E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g697 . . . . . . . . Cmo19g00569 Cmo11g01418 . . . . . Cpe04g00325 Cpe15g00443 Bhi05g01042 . . . . . . Cla02g00678 Cam02g0711 Cec02g0724 Cco02g0746 Clacu02g0720 Cmu02g0717 Cre02g1030 Cone12ag1049 Cone8ag1081 . . Lsi03g00572 Csa07g00688 . Cme01g00117 . . . . . . . . . . . . Cma19g00556 Car11g01141 Car19g00414 . . . . . . . . . . . . . . . . . . Chy01g00127 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011358 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00572 Lsi_Chr03 FPKM 596.080139 657.407654 426.173492 439.61441 167.108307 135.021637 155.744446 513.651001 597.805115 522.768188