Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00576 ATGGCGGCGTTTCGGTCTGCATTCGATGCCGGAGAGATGAGAACAGAGTTCGAGAAGGCCGGCATCAAATCCACATTCATCCCCTTCATTTGGAAGCATTTGCTTCACGATCCGAACAACCTATTCGACCATAATCTGGCATCCGAATTGGAGTGGGAACAAGCCGTGCCTTCGCTGCCGTCGGCGGCCTACTGCTTGCTCCGGTCAAAATTTAAGCCTCTTACTTCCACCGTCCATTCCGTCATCGATTCCTCCGATCAGGTCACCACCAAACTCCTTATCAAGCTTCAGAGTGGAGCTTTTGTGGAGGCTGTCATCATGAGGTATGATACTCGTCTGGGAAAATATGGCGGCAAACCTCGTCCAGGTGGTCTGCGGTCTACTCTCTGTATTTCTTCACAGGTTGGCTGCAAAATGGGATGCAGATTCTGTGCAACTGGAACGATGGGATATAAAAGCAATTTGACTTCAGGGGAGATAGTAGAGCAGTTGGTCCATGCCTCCCGTTTGTCCCAAATACGCAATGTTGTTTTCATGGGAATGGGAGAACCATTGAATAACTATTCTGCTTTAGTGGAAGCTGTCCGTGCCATGATAGGCTCGCCGTTCTTATTATCACCCAAGAGGATTACTATCTCAACTGTTGGGATTATTCATGCTATAAACAAACTGCATGGTGATCTACCAGGATTGAACTTGGCCGTTTCCTTGCATGCACCTGTGCAAGATATTCGTTGTCAGATAATGCCTGCAGCTCGGGCTTTTCCTTTACAAAAACTTATGGATGCTCTCCAAGAATATCAAAAAAAGAGTCAGCAAAAGATATTAATCGAGTACATAATGCTTGACGGAGTGAATGATGAGGAGCAACATGCCCACCAACTCGGAAAATTGTTAGAGACATTCCAAGTGGTTGTGAACTTAATACCATTCAATCCTATTGGTAGTTCAAGCCAATTCAGAACTAGTGGTGATGAGAAAGTTTTAGCATTTCAAAAAGTTCTTCGCGGTACGTATAATATACGCACAACAGTTCGTAAGCAGATGGGTCAAGATATTAGTGGTGCATGTGGTCAACTGGTGGTCAGCCTGCCTAATAGAAGCTCTGGTAGACAAACTAGTGTTCTACCTGACATTGAAGATCTTCACCTTTGA 1155 45.19 MAAFRSAFDAGEMRTEFEKAGIKSTFIPFIWKHLLHDPNNLFDHNLASELEWEQAVPSLPSAAYCLLRSKFKPLTSTVHSVIDSSDQVTTKLLIKLQSGAFVEAVIMRYDTRLGKYGGKPRPGGLRSTLCISSQVGCKMGCRFCATGTMGYKSNLTSGEIVEQLVHASRLSQIRNVVFMGMGEPLNNYSALVEAVRAMIGSPFLLSPKRITISTVGIIHAINKLHGDLPGLNLAVSLHAPVQDIRCQIMPAARAFPLQKLMDALQEYQKKSQQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGSSSQFRTSGDEKVLAFQKVLRGTYNIRTTVRKQMGQDISGACGQLVVSLPNRSSGRQTSVLPDIEDLHL 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7081369 7086079 + Lsi03G005760.1 Lsi03g00576 658326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00576 384 CDD Radical_SAM 136 336 - -
Lsi03g00576 384 Pfam Radical SAM superfamily 132 290 IPR007197 GO:0003824|GO:0051536
Lsi03g00576 384 SUPERFAMILY Radical SAM enzymes 128 317 - -
Lsi03g00576 384 Pfam 4Fe-4S single cluster domain 136 221 - -
Lsi03g00576 384 PANTHER 23S RRNA METHYLTRANSFERASE 3 376 IPR040072 -
Lsi03g00576 384 SFLD adenosine C2 methyltransferase (RlmN-like) 57 367 IPR004383 GO:0006364|GO:0008173
Lsi03g00576 384 SFLD Radical SAM 57 367 IPR007197 GO:0003824|GO:0051536
Lsi03g00576 384 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 3 376 - -
Lsi03g00576 384 PIRSF Cfr 9 377 IPR004383 GO:0006364|GO:0008173
Lsi03g00576 384 ProSiteProfiles Radical SAM core domain profile. 123 352 IPR007197 GO:0003824|GO:0051536
Lsi03g00576 384 Gene3D Aldolase class I 76 368 IPR013785 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00576 - - - csv:101215180 716.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00576 Lsi-Chr3:7081369 Lsi04g00876 Lsi-Chr4:8595103 1.15E-51 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g704 . . . . . . . . Cmo19g00565 . . . . . . . Cpe15g00438 . . . . . . . Cla02g00682 Cam02g0716 Cec02g0729 Cco02g0751 Clacu02g0725 Cmu02g0723 Cre02g1035 Cone12ag1045 Cone8ag1078 . . Lsi03g00576 Csa07g00683 . Cme01g00121 . . . . . . . . . . . . Cma19g00551 . Car19g00409 . . . . . . . . . . . . . . . . . . Chy01g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011647 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00576 Lsi_Chr03 FPKM 4.388316 4.653382 6.192902 7.641277 11.214595 4.60174 7.248821 13.650481 11.887596 14.682445