Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00577 ATGGAAAAGAAGGAAACGGCCGGCGATGCCGATCGTCCATGGCAGTCTTACCACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGAGTTGACAAGGAGAAAGTACAAAGAATTGTATATGAAATGAGTAAAGGGTCAAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCGCCATCAGAGAAAAGATTGAGAAGATGCGAGCTAGGTGTGTACAACTTACTGCAACGGATCTTTGTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGATCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGCTGAAACTTTAAGCAATCCTTTATTAAAGGGCAAGCCGATGGCTGTTGGTAGCATGTCTATGCTTTCCACGGCTAACTATGAGGCTCGAAAGTATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCAGAGTTAATTTTGGTTCCCACAGATTTTGAGAAGTATAATTATTACAGTGATTTAACTAGAAAAGTATTTCATAGGTATGATCCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGAAAGAGGCCTTACTAGTGAAGAAATTGCTATGGATCTCAGAACCAGTATTTATGAAGAGACTGGTCTTACGTGTAGTGCCGGGGCTGCTGCCAACCGACTACTTGCCAAGGTTTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTACCAAATGACCGAAGAGCTATTGTTACATTCATATCATCACTACCCATAAGAAAGATTGGTGGGATTGGAAAGGTCACTGAACATATCTTAAAGGGTGCTTTGGGGATTAATACATGCGAGGAGATGCTACTAAAGGGTGGTTATCTCTGTGCGTTGTTTTCTCAATCTTCAGCAGATTATTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGAAGACTGGCAGCGGACTAGTATTGCTTGGTGATCAGGAAAATGAATCTACCATTGTTGAATTCTTTGACCAGATCATTAGAAAGTATCCAATCACTGACCTTGCGGAGATGCTGTCAATGGACATGGAAAAAGAAGGTCTAACTGGGCGGACATTGACTCTTAAACTAAAAACTGCATCCTTTGAGGTTAAAACCAGAGCTGTAACTTTGCAAAAATACATTTGCTCCAGCAGTGACATCTTGCAACATGCATCAAGGCTACTAAAGGCTGAATTGCCCATTTCTCTAAGACTGATCGGGCTGCGGATATCTCACTTCAATGAAGATGGAGCCATTGCTGAGTCTGATCCGACCCAAACATCTATCACTAGATTTATTACATCAGGAGATGCTTCTAGAAAGAGTATGGGTGATTGTTGCTCCTTGAATCATGATTCCAACAATGATGGTTTCATGGATGACACTGAAATTGATTTATGCATCAATGGTAATGATTCTGAAACACACCATCAAGATAGTAATGATCCAAGAATCGACAACAAATTCTTGAATATGAATGACAGCAACTGTACGTCCAGCAATGATGCTGAGAAGCCGGAGAAACTTAAGAACCTTTTGAGCAACCTCGGCACTGACCAGGTGGACATTCTTAATACCATAGGAAGCACCTCAGAATCCTCGGACGCCTTAATCCTTCGAGTTTCAAGCACAGCATGTGCATCAAGAAACCTTGAAGGCAATCCCAATAGTAATGTGGATACCGAAAGTCAGGTCGAGGTAAGATCACCAGATAATAATGGACAGAATTGGTGGATAGATGACTACAAATGTACAATCTGTGGTGCTGAAGTGCCAACGAGTTTCGTTGATGAAAGACAAGAGCACATAGATTTCCACATTGCAGAAAAATTTCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCTTACGCCAAGGCAAAGTCTGCATTGGCTCGGTATTGGTTTTGTCATGTGCATTCCAGAAGCCCGATCGAGTCTGCCAACCGCAACAGTCGAAACAAGTGGAAATGACATTGAACTCTAA 2070 42.17 MEKKETAGDADRPWQSYHTVYTNAKAGMEGVDKEKVQRIVYEMSKGSKYFENEERKEAAIREKIEKMRARCVQLTATDLCQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAAETLSNPLLKGKPMAVGSMSMLSTANYEARKYGVRAAMPGFIARRLCPELILVPTDFEKYNYYSDLTRKVFHRYDPNFLAASLDEAYLDITEVCKERGLTSEEIAMDLRTSIYEETGLTCSAGAAANRLLAKVCSDINKPNGQFILPNDRRAIVTFISSLPIRKIGGIGKVTEHILKGALGINTCEEMLLKGGYLCALFSQSSADYFLSVGLGLGSTDTPQKTGSGLVLLGDQENESTIVEFFDQIIRKYPITDLAEMLSMDMEKEGLTGRTLTLKLKTASFEVKTRAVTLQKYICSSSDILQHASRLLKAELPISLRLIGLRISHFNEDGAIAESDPTQTSITRFITSGDASRKSMGDCCSLNHDSNNDGFMDDTEIDLCINGNDSETHHQDSNDPRIDNKFLNMNDSNCTSSNDAEKPEKLKNLLSNLGTDQVDILNTIGSTSESSDALILRVSSTACASRNLEGNPNSNVDTESQVEVRSPDNNGQNWWIDDYKCTICGAEVPTSFVDERQEHIDFHIAEKFQEEESGIRSRTLTPRQSLHWLGIGFVMCIPEARSSLPTATVETSGNDIEL 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7085616 7096153 - Lsi03G005770.1 Lsi03g00577 658327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00577 689 ProSiteProfiles UmuC domain profile. 103 283 IPR001126 GO:0006281
Lsi03g00577 689 ProSiteProfiles Zinc finger UBZ3-type profile. 605 642 IPR041298 -
Lsi03g00577 689 CDD PolY_Pol_IV_kappa 104 441 IPR022880 GO:0003887
Lsi03g00577 689 SUPERFAMILY DNA/RNA polymerases 78 331 IPR043502 -
Lsi03g00577 689 Pfam impB/mucB/samB family C-terminal domain 367 445 IPR017961 GO:0003684|GO:0006281
Lsi03g00577 689 Pfam Ubiquitin-Binding Zinc Finger 608 642 IPR041298 -
Lsi03g00577 689 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 355 439 IPR036775 GO:0003684|GO:0006281
Lsi03g00577 689 Gene3D - 120 168 - -
Lsi03g00577 689 Pfam impB/mucB/samB family 106 250 IPR001126 GO:0006281
Lsi03g00577 689 Gene3D - 21 107 - -
Lsi03g00577 689 Gene3D - 108 258 IPR043128 -
Lsi03g00577 689 Gene3D - 349 446 IPR036775 GO:0003684|GO:0006281
Lsi03g00577 689 Gene3D - 259 332 - -
Lsi03g00577 689 PANTHER DNA POLYMERASE KAPPA 7 648 - -
Lsi03g00577 689 Coils Coil 50 70 - -
Lsi03g00577 689 ProSitePatterns EF-hand calcium-binding domain. 480 492 IPR018247 -
Lsi03g00577 689 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00577 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 1082.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00548 Lsi-Chr3:6629735 Lsi03g00577 Lsi-Chr3:7085616 9.60E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00577 Lsi_Chr03 FPKM 9.728403 11.18954 11.201569 11.47896 17.631899 17.231033 17.551119 25.660744 25.06814 25.214094