Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00582 ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTTCGAAGTCTCTTTTTCAAGCAAGAGATGGAATTGTCTCTGATTGGGCTTCAGAATGCTGGAAAAACATCACTTGTAAATGTTATTGCGACGGGTGGATACAGTGAAGACATGATTCCAACGGTAGGATTTAACATGAAGAAGGTGACAAAAGGAAATGTAACAATAAAGCTTTGGGATCTTGGAGGCCAACCAAGGTTCCGTAGCATGTGGGAAAGATATTGTCGTGCAGTATCTGCAATTGTTTATGTTGTGGATGCTGCTGATTACGAGAACTTGTCTGTCTCAAGAAGTGAACTTCATGACTTGTTGAGTAAGCCTTCACTTAATGGAATCCCATTGCTGGTATTGGGTAACAAGATTGACAAACAGGGAGCTCTGTCTAAGCAGGATCTCACAGAACGAATGGGACTCAAGTCTATAACTGATAGAGAAGTCTGTTGCTTTATGATTTCCTGCAAGAACTCAACCAATATCGACACTGTTATTGATTGGCTCGTAAAGCATTCAAAGTCGAAAAACTGA 555 40.9 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSRSELHDLLSKPSLNGIPLLVLGNKIDKQGALSKQDLTERMGLKSITDREVCCFMISCKNSTNIDTVIDWLVKHSKSKN 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7150640 7153980 + Lsi03G005820.1 Lsi03g00582 658332

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00582 184 ProSiteProfiles small GTPase Arf family profile. 13 180 - -
Lsi03g00582 184 ProSiteProfiles small GTPase Rab1 family profile. 15 184 - -
Lsi03g00582 184 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 182 IPR027417 -
Lsi03g00582 184 CDD Arl10_like 21 179 IPR044154 GO:0003924|GO:0005525|GO:0015031
Lsi03g00582 184 PRINTS GTP-binding SAR1 protein signature 21 44 IPR006689 GO:0003924|GO:0005525
Lsi03g00582 184 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Lsi03g00582 184 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Lsi03g00582 184 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 184 - -
Lsi03g00582 184 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 1 184 - -
Lsi03g00582 184 Pfam ADP-ribosylation factor family 9 178 IPR006689 GO:0003924|GO:0005525
Lsi03g00582 184 Gene3D - 1 181 IPR027417 -
Lsi03g00582 184 SMART arf_sub_2 1 184 - -
Lsi03g00582 184 SMART rab_sub_5 20 183 - -
Lsi03g00582 184 SMART sar_sub_1 4 180 IPR006689 GO:0003924|GO:0005525
Lsi03g00582 184 TIGRFAM small_GTP: small GTP-binding protein domain 18 176 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00582 K07955 ARL8; ADP-ribosylation factor-like protein 8 - csv:101214940 369.777
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00582 Lsi-Chr3:7150640 Lsi09g00919 Lsi-Chr9:11360420 1.29E-56 dispersed
Lsi03g00582 Lsi-Chr3:7150640 Lsi08g01676 Lsi-Chr8:24519267 4.29E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g718 . . . Bda08g00681 . . . . Cmo19g00562 Cmo11g01421 . . . . . Cpe04g00328 Cpe15g00435 . . . . . . . Cla02g00686 Cam02g0719 Cec02g0732 Cco02g0754 Clacu02g0729 Cmu02g0727 Cre02g1038 . Cone8ag1075 . Cone10ag1049 Lsi03g00582 Csa07g00680 . Cme01g00124 . . . . . . . . . . . Cma11g01699 Cma19g00548 Car11g01144 Car19g00406 . . . . . . . . . . . . . . . . . . Chy01g00134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000951 4 4 4 7 6 2 3 2 2 2 1 2 2 2 2 2 2 5 3 2 2 3 2 2 2 1 2 5 4 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00582 Lsi_Chr03 FPKM 8.756364 8.746242 15.14075 17.069944 8.98376 9.400929 8.145292 34.872772 35.743526 34.870174