Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00598 ATGATTGCGGGTGATGTTATTCGTCTAGAAGGCGATGAAGTCTGGCATATGACCAAAGTGTTGAGGTTGAAGACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTGGTAGAAGGGAGCATAAAGAACATTCGTGTCAATGGCCTCGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTACTCTAAAGGGTGGTCGTGCTGACTGGCTTGTTGAGAAATGTACCGAATTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATTTCTGATAACCGGGTGCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTGAGTCAATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCTCTTGTAAGTGCATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACGGGTATCTTCAAATCAGCACCATTGCAAAGCCTCAAAGTCGGAGCGTTTGCGGTTTGGGGCATGTTAATCCGCCATTGCCGGCGGCGAAGTTCCATGCGGGGACAACATTCTCACCCACTGAAGTCGGGTCTCGCCGGACCCGATGAGGAAAACGAACCAGTTCGCTCGTATCTCCCTGGAATGAACGTCCCGTTAGGCGCCGGAATTCGGAAGAAGGGAACTGGAGTCCGACCATGGCTACTACTGGACTCGACCGGCGGAGCTCAGGTAGTTGAGGCCGGAAAACATGCGATTATGCGGCGGACCGGCCTGCCGGCGCGTGACCTTCGGATTCTTGATCCGTTGCTCTCTTATCCATCTACGATTCTTGGACGTGAGAAAGCGATTGTGATCAATTTGGAGCACATCAAAGCAATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCTGTAACCCCCTTTGTAGAGGAGCTTCAGAGGCGGGTATTGCGGCACCATCAAGCCACTAAGGCTTCTCAGGTTACAATTCGAATTACGGAGGGCGTTGGCGATGATTCTAATTGGAGAAATCTGTATGACCTGGAGGAGCCTCGATCAAGGGCTCAGAGTCCTCCTAATTCATACCAAGGATTTCCACAGGCTGAAGAGGAGGAGAGTAAGGAAAACATGAAACAAAGTCTTGAAACTCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGTGAAGCAGATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCTATAACTGGACGAGTTCAAAAGGTGCGGGATGAATTAGAACACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAAAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCCTCAATTCCTGAGAGAGATGAAATGGAAGATGACGAGCAGCAGTTGGGCAAAGATGACAGGCACGAGACTTGTCTTATTATTCCTGCTGAAATATCATTGGACGGTGGTGGAATTTCTGCTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCATGGGACCCGGACAAGCACTACCCATAGCGCTATAAGCAAACACCTCGATGTGGAGGAACTCGAGATGCTATTGGAGGCATACTTTGTGCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAACAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACCCTCGTCGTCAGTATCTTCGGGATGAACATCCATATCGAATTGTTTGAACCCGAAAAAGCAGGTATGCCGGAGTTCCTGTGGACCGTTGGTGGTGGCGCTACAGGAACCATCTTCTTGTATGTCATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTCGAGTAG 2193 47.42 MIAGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCESINETKLSFVAVAEATPLVSALASTEIESGGLLVVGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATGIFKSAPLQSLKVGAFAVWGMLIRHCRRRSSMRGQHSHPLKSGLAGPDEENEPVRSYLPGMNVPLGAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVEELQRRVLRHHQATKASQVTIRITEGVGDDSNWRNLYDLEEPRSRAQSPPNSYQGFPQAEEEESKENMKQSLETREGLKVLPFEFVALEACLEAACSCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDEMEDDEQQLGKDDRHETCLIIPAEISLDGGGISANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSIFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIFLYVIAIAWCKHKRLLE 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7436108 7446147 - Lsi03G005980.1 Lsi03g00598 658348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00598 730 Pfam RNA methyltransferase domain 131 199 IPR046886 -
Lsi03g00598 730 Coils Coil 447 467 - -
Lsi03g00598 730 SUPERFAMILY alpha/beta knot 67 200 IPR029028 -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 399 428 - -
Lsi03g00598 730 Gene3D Magnesium transport protein CorA, transmembrane region 416 665 - -
Lsi03g00598 730 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 252 730 - -
Lsi03g00598 730 CDD RsmE-like 74 198 IPR046886 -
Lsi03g00598 730 CDD Mrs2_Mfm1p-like 278 728 IPR039204 -
Lsi03g00598 730 Gene3D - 1 210 IPR029026 -
Lsi03g00598 730 SUPERFAMILY PUA domain-like 3 47 IPR015947 -
Lsi03g00598 730 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 5 199 IPR006700 GO:0006364|GO:0008168
Lsi03g00598 730 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 252 730 IPR039204 -
Lsi03g00598 730 Pfam RNA methyltransferase PUA domain 9 46 IPR046887 -
Lsi03g00598 730 Gene3D - 267 349 - -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 530 555 - -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 229 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00598 Lsi-Chr3:7436108 Lsi03g01255 Lsi-Chr3:23169213 1.09E-107 dispersed
Lsi03g00598 Lsi-Chr3:7436108 Lsi09g01276 Lsi-Chr9:20562789 5.36E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00598 - - csv:101213978 863.603