Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00598 ATGATTGCGGGTGATGTTATTCGTCTAGAAGGCGATGAAGTCTGGCATATGACCAAAGTGTTGAGGTTGAAGACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTGGTAGAAGGGAGCATAAAGAACATTCGTGTCAATGGCCTCGACATTCTGGCTATGGAAGATCCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCCTGCGGTACTCTAAAGGGTGGTCGTGCTGACTGGCTTGTTGAGAAATGTACCGAATTGGGTGCCAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATTTCTGATAACCGGGTGCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTGAGTCAATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACACCTCTTGTAAGTGCATTAGCTTCAACAGAAATAGAGTCTGGTGGGCTTTTGGTTGTCGGACCTGAAGGAGACTTCACCGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACGGGTATCTTCAAATCAGCACCATTGCAAAGCCTCAAAGTCGGAGCGTTTGCGGTTTGGGGCATGTTAATCCGCCATTGCCGGCGGCGAAGTTCCATGCGGGGACAACATTCTCACCCACTGAAGTCGGGTCTCGCCGGACCCGATGAGGAAAACGAACCAGTTCGCTCGTATCTCCCTGGAATGAACGTCCCGTTAGGCGCCGGAATTCGGAAGAAGGGAACTGGAGTCCGACCATGGCTACTACTGGACTCGACCGGCGGAGCTCAGGTAGTTGAGGCCGGAAAACATGCGATTATGCGGCGGACCGGCCTGCCGGCGCGTGACCTTCGGATTCTTGATCCGTTGCTCTCTTATCCATCTACGATTCTTGGACGTGAGAAAGCGATTGTGATCAATTTGGAGCACATCAAAGCAATTATCACTGCTCAAGATGTGTTCGTGTTGAATGCTAGGGATCCGTCTGTAACCCCCTTTGTAGAGGAGCTTCAGAGGCGGGTATTGCGGCACCATCAAGCCACTAAGGCTTCTCAGGTTACAATTCGAATTACGGAGGGCGTTGGCGATGATTCTAATTGGAGAAATCTGTATGACCTGGAGGAGCCTCGATCAAGGGCTCAGAGTCCTCCTAATTCATACCAAGGATTTCCACAGGCTGAAGAGGAGGAGAGTAAGGAAAACATGAAACAAAGTCTTGAAACTCGGGAGGGATTGAAGGTTCTTCCTTTTGAGTTTGTTGCTTTGGAGGCATGCCTTGAAGCTGCTTGCAGTTGCTTAGAAAGTGAAGCAGATACATTGGAGCTAGAAGCTCACCCAGCTTTGGATAAGCTGACTTCTAAGATTAGTACTCTCAATTTGGAACGGGTGCGTCAGATCAAAAGTCGATTGGTTGCTATAACTGGACGAGTTCAAAAGGTGCGGGATGAATTAGAACACTTGCTAGATGATGATGAGGATATGGCTGAGATGTACTTAACAGAAAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCCTCAATTCCTGAGAGAGATGAAATGGAAGATGACGAGCAGCAGTTGGGCAAAGATGACAGGCACGAGACTTGTCTTATTATTCCTGCTGAAATATCATTGGACGGTGGTGGAATTTCTGCTAATTATGAAGGCAATATGGATGCTTCCCAGGATCATTTGTTTGGTGCATCAAATGTGGGCAGGGACAGCCATGGGACCCGGACAAGCACTACCCATAGCGCTATAAGCAAACACCTCGATGTGGAGGAACTCGAGATGCTATTGGAGGCATACTTTGTGCAAATTGATGGTACACTGAACAAACTTTCCACGCTGAGGGAGTATGTAGATGACACAGAAGATTACATCAACATAATGCTGGATGACAAACAGAACCATCTTCTACAAATGGGAGTAATGTTGACAACGGCAACCCTCGTCGTCAGTATCTTCGGGATGAACATCCATATCGAATTGTTTGAACCCGAAAAAGCAGGTATGCCGGAGTTCCTGTGGACCGTTGGTGGTGGCGCTACAGGAACCATCTTCTTGTATGTCATTGCCATTGCCTGGTGCAAGCACAAACGCTTGCTCGAGTAG 2193 47.42 MIAGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFERITLAATKQCESINETKLSFVAVAEATPLVSALASTEIESGGLLVVGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATGIFKSAPLQSLKVGAFAVWGMLIRHCRRRSSMRGQHSHPLKSGLAGPDEENEPVRSYLPGMNVPLGAGIRKKGTGVRPWLLLDSTGGAQVVEAGKHAIMRRTGLPARDLRILDPLLSYPSTILGREKAIVINLEHIKAIITAQDVFVLNARDPSVTPFVEELQRRVLRHHQATKASQVTIRITEGVGDDSNWRNLYDLEEPRSRAQSPPNSYQGFPQAEEEESKENMKQSLETREGLKVLPFEFVALEACLEAACSCLESEADTLELEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKMVQQQLENSSTSSIPERDEMEDDEQQLGKDDRHETCLIIPAEISLDGGGISANYEGNMDASQDHLFGASNVGRDSHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSIFGMNIHIELFEPEKAGMPEFLWTVGGGATGTIFLYVIAIAWCKHKRLLE 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7436108 7446147 - Lsi03G005980.1 Lsi03g00598 658348

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00598 730 Pfam RNA methyltransferase domain 131 199 IPR046886 -
Lsi03g00598 730 Coils Coil 447 467 - -
Lsi03g00598 730 SUPERFAMILY alpha/beta knot 67 200 IPR029028 -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 399 428 - -
Lsi03g00598 730 Gene3D Magnesium transport protein CorA, transmembrane region 416 665 - -
Lsi03g00598 730 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 252 730 - -
Lsi03g00598 730 CDD RsmE-like 74 198 IPR046886 -
Lsi03g00598 730 CDD Mrs2_Mfm1p-like 278 728 IPR039204 -
Lsi03g00598 730 Gene3D - 1 210 IPR029026 -
Lsi03g00598 730 SUPERFAMILY PUA domain-like 3 47 IPR015947 -
Lsi03g00598 730 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 5 199 IPR006700 GO:0006364|GO:0008168
Lsi03g00598 730 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 252 730 IPR039204 -
Lsi03g00598 730 Pfam RNA methyltransferase PUA domain 9 46 IPR046887 -
Lsi03g00598 730 Gene3D - 267 349 - -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 530 555 - -
Lsi03g00598 730 MobiDBLite consensus disorder prediction 229 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00598 - - - csv:101213978 863.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00598 Lsi-Chr3:7436108 Lsi03g01255 Lsi-Chr3:23169213 1.09E-107 dispersed
Lsi03g00598 Lsi-Chr3:7436108 Lsi09g01276 Lsi-Chr9:20562789 5.36E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g763 Blo02g00922 Blo03g00061 . . . . . . Cmo19g00555 . . . . . . . Cpe15g00430 . . . . . . . Cla02g00696 Cam02g0729 Cec02g0744 Cco02g0768 Clacu02g0740 Cmu02g0735 Cre02g1048 . . Cone3ag1042 . Lsi03g00598 Csa07g00671 . Cme01g00133 . . . . . . . . Sed07g1141 Cmo04g00467 . . Cma19g00541 . Car19g00398 . . Bhi11g01118 Tan01g0612 Cmetu07g1601 . . Mch10g0413 . . . . . . . . . . Chy01g00144 Cme07g02206
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G16010 85.0 6.6e-207 716.8
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G16010 52.6 4.1e-108 388.7
Lsi09g01276 . 1 410 MRS2 Gene Family AT5G64560 63.1 4.0e-128 454.9
Lsi05g00972 . 662 969 MRS2 Gene Family AT5G64560 59.5 1.8e-91 333.2
Lsi03g00598 . 244 730 MRS2 Gene Family AT3G19640 62.3 1.7e-147 519.6
Lsi05g00158 . 54 473 MRS2 Gene Family AT3G58970 65.1 1.7e-138 489.6
Lsi08g00899 . 6 380 MRS2 Gene Family AT2G03620 68.6 2.0e-136 482.6
Lsi03g01255 . 13 447 MRS2 Gene Family AT2G03620 52.8 3.4e-112 402.1
Lsi09g01276 . 1 372 MRS2 Gene Family AT5G09690 56.7 5.3e-97 351.3
Lsi05g00972 . 662 957 MRS2 Gene Family AT5G09690 57.8 3.2e-86 315.5
Lsi03g01255 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Lsi09g01276 . 23 321 MRS2 Gene Family AT5G09720 55.5 1.9e-72 269.6
Lsi05g00972 . 696 945 MRS2 Gene Family AT5G09720 57.7 3.6e-68 255.4
Lsi03g01255 . 1 447 MRS2 Gene Family AT1G80900 83.2 1.2e-200 696.0
Lsi08g00899 . 6 380 MRS2 Gene Family AT1G80900 54.2 1.3e-106 383.6
Lsi03g00069 . 116 255 MRS2 Gene Family AT5G22830 68.6 6.1e-46 182.2
Lsi03g00068 . 1 139 MRS2 Gene Family AT5G22830 61.4 4.4e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005959 4 0 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00598 Lsi_Chr03 FPKM 18.105932 21.314852 9.197314 10.364864 10.81038 10.233588 12.318817 10.224295 9.281021 8.886127