Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00600 ATGAGGGAATGCATCTCGATTCACATCGGTCAGGCAGGGATTCAGGTCGGCAATGCATGCTGGGAACTATACTGTCTTGAACATGGAATTCAGCCTGATGGTCAAATGCCGAGTGACACGACTGTAGGCGGAGGCGATGATGCCTTCAACACCTTCTTCAGTGAAACAGGTGCAGGCAAGCATGTTCCTCGTGCTGTTTTCGTCGATCTCGAGCCTACTGTCATTGATGAGGTGAGGACTGGAATTTATCGCCAATTGTTTCATCCTGAACAGCTAATCAGCGGCAAGGAAGATGCTGCCAACAACTTTGCTCGTGGCCATTATACCATTGGCAAGGAAATTGTTGATCTCTGTTTGGATCGCATTAGAAAGCTCGCTGATAACTGCACTGGACTTCAAGGCTTCCTGGTTTTTAACGCTGTTGGTGGGGGTACTGGATCTGGTCTTGGCTCCCTCCTTTTGGAGCGTTTGTCTGTTGACTATGGCAAGAAATCAAAGCTTGGTTTCACTGTTTATCCCTCTCCACAAGTTTCCACCTCTGTTGTTGAACCTTACAACAGTGTTCTTTCAACCCATTCCCTCCTTGAACATACAGATGTTTCTGTGCTTCTTGACAATGAGGCCATTTATGACATTTGTAGACGCTCCCTTGACATTGAGCGACCCACATACACAAACCTCAACCGTCTCATCTCTCAGGTGATTTCATCCCTGACAGCCTCTCTACGGTTCGATGGAGCTCTGAATGTGGATGTCACTGAGTTCCAAACGAATTTGGTCCCTTACCCAAGAATCCACTTCATGCTTTCCTCCTATGCCCCAGTGATCTCTGCAGAGAAGGCATACCACGAACAGCTCTCTGTAGCAGAGATCACCAACAGTGCATTCGAGCCATCTTCCATGATGGCCAAGTGTGATCCCCGCCATGGGAAATACATGGCTTGCTGTCTGATGTATCGAGGAGACGTCGTGCCAAAGGACGTCAACGCCGCTGTTGCAACCATCAAAACCAAGCGCACAATCCAGTTCGTGGACTGGTGCCCCACTGGTTTCAAGTGTGGCATTAACTACCAACCACCAACTGTGGTTCCGGGTGGCGACCTCGCCAAAGTGCAGAGGGCAGTCTGTATGATCTCCAACTCGACGAGCGTGGCTGAGGTGTTCTCTCGCATAGACCACAAGTTTGATCTGATGTATGCAAAGAGGGCGTTTGTGCATTGGTACGTGGGGGAGGGCATGGAGGAGGGAGAGTTCTCTGAAGCTCGTGAGGATCTTGCGGCCCTCGAGAAGGATTATGAGGAAGTTGGCGCTGAGTCTGCTGAAGGTGATGATGAAGATCAAGAGGAGTACTGA 1353 49.67 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDTTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGIYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGDDEDQEEY 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7466185 7469161 + Lsi03G006000.1 Lsi03g00600 658350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00600 450 Gene3D - 269 383 IPR037103 -
Lsi03g00600 450 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 422 438 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 360 379 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 321 342 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 347 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Alpha-tubulin signature 385 401 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 CDD alpha_tubulin 2 435 - -
Lsi03g00600 450 Gene3D Helix hairpin bin 384 436 IPR023123 -
Lsi03g00600 450 Coils Coil 418 438 - -
Lsi03g00600 450 Gene3D Tubulin/FtsZ, GTPase domain 1 268 IPR036525 -
Lsi03g00600 450 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Lsi03g00600 450 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Lsi03g00600 450 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Lsi03g00600 450 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Lsi03g00600 450 SMART Tubulin_C_4 248 393 IPR018316 -
Lsi03g00600 450 Pfam Tubulin C-terminal domain 263 392 IPR018316 -
Lsi03g00600 450 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 380 408 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 SUPERFAMILY Tubulin C-terminal domain-like 246 436 IPR008280 -
Lsi03g00600 450 PANTHER TUBULIN 1 446 IPR000217 GO:0005874|GO:0007017
Lsi03g00600 450 PANTHER TUBULIN ALPHA CHAIN 1 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00600 K07374 TUBA; tubulin alpha - csv:101213258 891.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi03g00600 Lsi03g01006 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00600 Lsi-Chr3:7466185 Lsi03g02167 Lsi-Chr3:32775128 5.81E-126 dispersed
Lsi03g01307 Lsi-Chr3:23888830 Lsi03g00600 Lsi-Chr3:7466185 0 transposed
Lsi09g01021 Lsi-Chr9:14331607 Lsi03g00600 Lsi-Chr3:7466185 4.34E-180 transposed
Lsi10g00923 Lsi-Chr10:13702006 Lsi03g00600 Lsi-Chr3:7466185 7.05E-59 transposed
Lsi03g00600 Lsi-Chr3:7466185 Lsi03g01006 Lsi-Chr3:19348856 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00600 Lsi_Chr03 FPKM 0.721674 0.501272 0.390115 0.652912 0.85371 0.934467 1.344248 0.342749 0.261688 0.567452