Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00601 ATGTCTGAATGTGCAAGCGGAACAACAGACATCAAGAAGTTTTTGCTTATCGCAAGAATGAGAAGACACAAGCCCACGTCACATCGGAGAGTGAAACGAAGGAAAAGGAGTGGAGCCTTAGCACTCATGTACCCTCTCCTTGTAGCATGTAAATCAATTAGCAATTTGCGCCGAGCTGCAGCTCAAGAAGTTGTTGACAAAGTTCGACAACATAGTGGCGTTCTTGTTGATCAGGCTCAACTTGTATCTAAAGAATTGATTCGAGTTGCCATACTTTGGCATGAAACGTGGCATGAGGCTCTAGAGGAAGCTAGTCGTTTGTACTTTGGTGAACATAACATTGAGGGGATGCTCAAGGTTTTGGAACCCTTGCATGAAATGCTTGAAGATGGGGCTATGAAGAATAACACAACCATAAAGGAAAGGGCATTCATTGAGGCATATCGCCGTGAGTTGCTTGAGGCCTATGAATGTTGCATGAAATATAAGAAAACCGGGAAAGATGCTGAACTTACTCAGGCTTGGGATCTGTATTATCATGTATTTAGACGAATAGATAAGCAACTTCAGAGCCTAACAACCCTGGATCTTCAGTCTGTTTCACCAGAGTTACTTGAATGTCGTAATCTGGAGCTTGCCGTTCCTGGTACTTATCGTGCAGAGTCACCGGTCGTGACAATTGCATCATTTGCAACACAGCTTGTTGTGATAACATCAAAACAGCGGCCCCGAAAGTTGACAATTCATGGGAGTGATGGTGAGGATTATGCATTCTTACTGAAGGGGCATGAAGACTTACGGCAAGATGAGCGCGTCATGCAGCTATTTGGTTTGGTTAATACATTGCTGGACAATTCAAGAAAAACTGCTGAAAAAGATCTTTCCATTCAACGGTATGATGTTATTCCACTATCCCCAAATAGTGGATTGATTGGTTGGGTCCCACATTGTGACACCCTGCATCATCTTATTCGTGAGTATAGAGATGCCAGAAAGATTACCTTGAACCAAGAGCACAAGTACATGCTTAGTTTTGCCCCCGATTATGATCACTTACCGCTCATAGCTAAAGTGGAAGTGTTTGAGTATGCACTATTCAATACCGAAGGAAATGACCTTGCAAGGGTTCTATGGTTGAAAAGTCGCACATCTGAGGTTGGTTATCTTCTTGGTTTGGGAGATCGACACCCAAGTAACCTTATGCTGCATCGTTATACTGGTAAGATTTTGCACATTGATTTTGGAGATTGCTTTGAAGCTTCAATGAACAGGGAGAAGTTTCCTGAGAAGGTGCCCTTCCGACTGACTAGAATGCTTGTCAAAGCTATGGAGGTTAGTGGTATTGAGGGAAACTTCCGTTCCACTTGTGAAAATGTGATGCAGGTTCTTCGATCAAACAAGGATAGTGTTATGGCTATGATGGAGGCTTTTGTGCACGACCCTCTCATAAATTGGCGTCTTTTCAACTTCAATGAAGTCCCACAAATGTCGATGTTTGCAAGCACTCATGCCCCTACTGTTGTGAATGCTGAAGATTCTGCTCAAAGTCGTGAACTTCTTCAACCTCAACGAGGTGCTCGTGAAAGAGAGCTTCTTCAGGCTGTTAATCAACTTGGTGATGCCAACGAGGTCTTGAATGAGCGTGCTGTTGTTGTGATGGCTCGAATGAGTAATAAACTGACCGGACGAGATTTCCCCACTTGTTCTTCTATGTCAACTGCTTCGGTTCAGCACGCAGTAGACCACAGCACCTTAATATCTGGGGATTCCCGTGAAGTTGATCATGGTCTCTCTGTTAAGCTTCAAGTTGAGAAGTTGATTGGTCAAGCTATGTCACACGAAAACCTATGTCAAAATTATGTCGGGTGGTGCCCCTTTTGGTAG 1884 43.63 MSECASGTTDIKKFLLIARMRRHKPTSHRRVKRRKRSGALALMYPLLVACKSISNLRRAAAQEVVDKVRQHSGVLVDQAQLVSKELIRVAILWHETWHEALEEASRLYFGEHNIEGMLKVLEPLHEMLEDGAMKNNTTIKERAFIEAYRRELLEAYECCMKYKKTGKDAELTQAWDLYYHVFRRIDKQLQSLTTLDLQSVSPELLECRNLELAVPGTYRAESPVVTIASFATQLVVITSKQRPRKLTIHGSDGEDYAFLLKGHEDLRQDERVMQLFGLVNTLLDNSRKTAEKDLSIQRYDVIPLSPNSGLIGWVPHCDTLHHLIREYRDARKITLNQEHKYMLSFAPDYDHLPLIAKVEVFEYALFNTEGNDLARVLWLKSRTSEVGYLLGLGDRHPSNLMLHRYTGKILHIDFGDCFEASMNREKFPEKVPFRLTRMLVKAMEVSGIEGNFRSTCENVMQVLRSNKDSVMAMMEAFVHDPLINWRLFNFNEVPQMSMFASTHAPTVVNAEDSAQSRELLQPQRGARERELLQAVNQLGDANEVLNERAVVVMARMSNKLTGRDFPTCSSMSTASVQHAVDHSTLISGDSREVDHGLSVKLQVEKLIGQAMSHENLCQNYVGWCPFW 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7471777 7480578 - Lsi03G006010.1 Lsi03g00601 658351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00601 627 Gene3D - 185 312 - -
Lsi03g00601 627 ProSiteProfiles FATC domain profile. 595 627 IPR003152 GO:0005515
Lsi03g00601 627 Pfam FATC domain 597 627 IPR003152 GO:0005515
Lsi03g00601 627 Pfam Phosphatidylinositol 3- and 4-kinase 386 486 IPR000403 -
Lsi03g00601 627 Pfam Phosphatidylinositol 3- and 4-kinase 256 384 IPR000403 -
Lsi03g00601 627 Gene3D - 381 528 IPR036940 GO:0016301
Lsi03g00601 627 CDD PIKKc_TOR 227 487 - -
Lsi03g00601 627 Pfam FKBP12-rapamycin binding domain 85 187 IPR009076 GO:0044877
Lsi03g00601 627 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 230 528 IPR000403 -
Lsi03g00601 627 PANTHER ATAXIA TELANGIECTASIA MUTATED ATM -RELATED 39 625 - -
Lsi03g00601 627 SMART Rapamycin_bind_3 85 188 - -
Lsi03g00601 627 SUPERFAMILY FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 89 186 IPR036738 GO:0044877
Lsi03g00601 627 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 260 274 IPR018936 GO:0016301
Lsi03g00601 627 PANTHER SERINE/THREONINE-PROTEIN KINASE TOR 39 625 IPR026683 GO:0004674
Lsi03g00601 627 Gene3D - 88 184 IPR036738 GO:0044877
Lsi03g00601 627 SMART pi3k_hr1_6 257 559 IPR000403 -
Lsi03g00601 627 SUPERFAMILY Protein kinase-like (PK-like) 170 491 IPR011009 -
Lsi03g00601 627 SMART FATC_2 595 627 IPR003152 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00601 K07203 MTOR, FRAP, TOR; serine/threonine-protein kinase mTOR [EC:2.7.11.1] - csv:101212051 1155.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00601 Lsi-Chr3:7471777 Lsi10g00324 Lsi-Chr10:5191047 7.48E-46 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g774 . . . . . Bpe12g00734 . . Cmo19g00552 . . . . . . . Cpe15g00427 Bhi05g01001 . . . . . . Cla02g00700 Cam02g0733 Cec02g0747 Cco02g0772 Clacu02g0744 Cmu02g0739 Cre02g1052 Cone12ag1029 . . . Lsi03g00601 Csa07g00668 . Cme01g00136 . Blo13g00276 Bda15g00469 . . . . Bma08g00017 . . . . Cma19g00538 . Car19g00395 . . . . . . . . . . . . . . . . . . Chy01g00147 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006863 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00601 Lsi_Chr03 FPKM 20.309525 19.641148 15.604869 15.787938 16.664415 16.458517 16.267427 13.939299 13.825356 13.008923