Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00618 ATGAGTGTTTTTCAACTCCATCTTCTTTTCTTGGCCCTTATAGTTAAATCTTCTTATGCCCAAAACTCAGCTCAAGACTACATCAATGGCCACAACTCAGCAAGATCAATAGTGGGTGTTGGAAATATGGTATGGAACACAACTCTTGCCGCCTATGCTCAAACATATGCCAACTCAAGGAAAGCTGATTGCCAATTGGTGCATTCCAATGGGCCTTATGGAGAGAACCTAGCAAAGGGCAACAATGGATTCACTGGCTCAGCTGCAGTGAAGCTATGGGTTGATGAAAAGCCTTACTATAGTCATAATAACAATGCATGTGTTGGTGGTGAGTGTCTTCATTACACTCAAGTTGTTTGGCAAAGCTCTTATAGAGTTGGATGTGCAAGAGTTCAATGCAATGATGGTTGGTGGTTTGTGTCTTGCAATTATGATCCTCCAGGCAATTGGGATGGGGAGTGGCCTTATTAG 471 42.68 MSVFQLHLLFLALIVKSSYAQNSAQDYINGHNSARSIVGVGNMVWNTTLAAYAQTYANSRKADCQLVHSNGPYGENLAKGNNGFTGSAAVKLWVDEKPYYSHNNNACVGGECLHYTQVVWQSSYRVGCARVQCNDGWWFVSCNYDPPGNWDGEWPY 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7703271 7703741 - Lsi03G006180.1 Lsi03g00618 658368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00618 156 CDD CAP_PR-1 24 156 - -
Lsi03g00618 156 PRINTS Allergen V5/Tpx-1 family signature 43 61 IPR001283 -
Lsi03g00618 156 PRINTS Allergen V5/Tpx-1 family signature 139 152 IPR001283 -
Lsi03g00618 156 PRINTS Allergen V5/Tpx-1 family signature 89 102 IPR001283 -
Lsi03g00618 156 PRINTS Allergen V5/Tpx-1 family signature 112 128 IPR001283 -
Lsi03g00618 156 SUPERFAMILY PR-1-like 21 156 IPR035940 -
Lsi03g00618 156 PANTHER CAP (CYSTEINE-RICH SECRETORY PROTEINS, ANTIGEN 5, AND PATHOGENESIS-RELATED 1 PROTEIN) SUPERFAMILY PROTEIN 11 156 - -
Lsi03g00618 156 SMART SCP_3 22 152 IPR014044 -
Lsi03g00618 156 Pfam Cysteine-rich secretory protein family 29 144 IPR014044 -
Lsi03g00618 156 ProSitePatterns CRISP family signature 2. 139 150 IPR018244 GO:0005576
Lsi03g00618 156 Gene3D CAP 21 156 IPR035940 -
Lsi03g00618 156 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 11 156 IPR001283 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00618 K13449 PR1; pathogenesis-related protein 1 - csv:101211573 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00612 Lsi-Chr3:7670147 Lsi03g00618 Lsi-Chr3:7703271 6.33E-43 dispersed
Lsi03g00618 Lsi-Chr3:7703271 Lsi03g00624 Lsi-Chr3:7766711 8.29E-52 dispersed
Lsi03g00996 Lsi-Chr3:19218273 Lsi03g00618 Lsi-Chr3:7703271 1.39E-47 dispersed
Lsi03g00618 Lsi-Chr3:7703271 Lsi03g00619 Lsi-Chr3:7716395 2.35E-52 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g792 . Blo03g00053 Bda06g01149 . Bpe07g00298 . Bma05g00636 Bma12g00310 Cmo19g00543 . . . . . . Cpe04g00336 Cpe15g00425 . . . . . . . Cla02g00705 Cam02g0738 Cec02g0752 Cco02g0778 Clacu02g0748 Cmu02g0742 Cre02g1056 . . . . Lsi03g00618 Csa07g00664 . Cme01g00139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00150 Cme07g02221
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00618 Lsi_Chr03 FPKM 0.860811 1.148524 1.01214 0.54493 0.447621 0.424873 0.166126 2.791031 2.455823 3.726658