Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00622 ATGACATTTGCCAACATTCTCTCAATCCTTTTCTTAATAGGGCTAACCCTAACCTTAGCTTCCATTGCCCCCATCTTGGCCAAAAGCTATCCTAAAAATTACATTGCTGCCCACAACACTATTCGTGTAGAGGTTGGCGTTGAGCCCCTCCATTGGAACGCCACCTTGGCAGCATATGCTCAAAATTACGCAAACACGAAGATCGCCACCGGTCAAATGGAGCACTCTAGAGGACCTTATGGGGAAAACCTAGCAGAGGGATACGAAGTGATGACAGCAGAGACGGCAGTGAGTCTTTGGGCCGACGAGAAGAAACATTACGACTACAATTCTAACATGTGTGTCAACGACTCTAGCCATTGCCTCCATTATACACAGTTGGTATGGAGGAACACCAAATCTGTTGGTTGTGCCCAAGTGAAGTGCCAAAACAATTGGGTTTTTCTAATATGCAACTATTATCCTCCTGGCAATTATATAGGCCAACGTCCATATTAA 498 44.98 MTFANILSILFLIGLTLTLASIAPILAKSYPKNYIAAHNTIRVEVGVEPLHWNATLAAYAQNYANTKIATGQMEHSRGPYGENLAEGYEVMTAETAVSLWADEKKHYDYNSNMCVNDSSHCLHYTQLVWRNTKSVGCAQVKCQNNWVFLICNYYPPGNYIGQRPY 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7757407 7757904 - Lsi03G006220.1 Lsi03g00622 658372

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00622 165 CDD CAP_PR-1 31 165 - -
Lsi03g00622 165 Pfam Cysteine-rich secretory protein family 36 153 IPR014044 -
Lsi03g00622 165 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 24 165 IPR001283 -
Lsi03g00622 165 Gene3D CAP 29 165 IPR035940 -
Lsi03g00622 165 SUPERFAMILY PR-1-like 9 165 IPR035940 -
Lsi03g00622 165 ProSitePatterns CRISP family signature 2. 148 159 IPR018244 GO:0005576
Lsi03g00622 165 PANTHER PATHOGENESIS-RELATED PROTEIN 1 24 165 - -
Lsi03g00622 165 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Lsi03g00622 165 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Lsi03g00622 165 PRINTS Allergen V5/Tpx-1 family signature 121 137 IPR001283 -
Lsi03g00622 165 PRINTS Allergen V5/Tpx-1 family signature 148 161 IPR001283 -
Lsi03g00622 165 SMART SCP_3 29 161 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00622 K13449 PR1; pathogenesis-related protein 1 - csv:101210987 289.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00622 Lsi-Chr3:7757407 Lsi03g00626 Lsi-Chr3:7785978 1.54E-113 dispersed
Lsi03g00621 Lsi-Chr3:7723692 Lsi03g00622 Lsi-Chr3:7757407 2.15E-54 tandem
Lsi03g00622 Lsi-Chr3:7757407 Lsi03g00623 Lsi-Chr3:7761822 2.64E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g793 . . Bda06g01148 . . . . . . . . . . . . . . . . . . . . . Cla02g00706 Cam02g0740 Cec02g0754 Cco02g0780 Clacu02g0749 Cmu02g0743 Cre02g1057 . . . . Lsi03g00622 Csa07g00663 . Cme01g00140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00151 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002300 0 1 0 0 0 16 0 4 4 0 1 3 1 1 1 2 2 0 1 3 1 1 0 3 1 10 1 2 4 0 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00622 Lsi_Chr03 FPKM 24.099461 25.477606 35.134556 34.912796 13.457401 14.426533 15.958107 30.659491 30.773499 30.35022