Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00628 ATGGCATTTACCAAATTTCTCTCCACATTTTGTTTTGTGGGACTAGCCCTAATACTAGCTCCAATATCTCCCACAGTTGCGAAAAGCAGCCCCCAAGACTTCGTCGATGCCCACAATGCCATTCGTGCTGAGTACGGTGTCGGGCCAGTCACCTGGAACAAAACCTTAGCTAAGTATGCTCAAAATTATGCCAAAACTAAGATCGCTACCTGCGAGATGGAGCATTCTATGGGACCTTATGGCGAAAATTTGGCCGAAGCATTTGAGACGACAACCGCAGAATTGACAGTGAACTATTGGGCTAGTGAGAAGAAATTTTACGACCACAAATCAAACAAGTGCGTCGAGGAAGAGTGCGGCCATTTCCTTCAAGTCGTCTGGAAGGACACGACATCGATTGGTTGCGCGGAAGTTAAGTGCAACAACAACTATATTTTCACTATTTGCAACTATTATCCTCCAGGAGGCTATCCTGACCAACTTCCTTACTAA 492 45.33 MAFTKFLSTFCFVGLALILAPISPTVAKSSPQDFVDAHNAIRAEYGVGPVTWNKTLAKYAQNYAKTKIATCEMEHSMGPYGENLAEAFETTTAELTVNYWASEKKFYDHKSNKCVEEECGHFLQVVWKDTTSIGCAEVKCNNNYIFTICNYYPPGGYPDQLPY 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7805463 7805954 - Lsi03G006280.1 Lsi03g00628 658378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00628 163 Pfam Cysteine-rich secretory protein family 35 151 IPR014044 -
Lsi03g00628 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1B 21 163 - -
Lsi03g00628 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 163 IPR001283 -
Lsi03g00628 163 SUPERFAMILY PR-1-like 29 163 IPR035940 -
Lsi03g00628 163 PRINTS Allergen V5/Tpx-1 family signature 119 135 IPR001283 -
Lsi03g00628 163 PRINTS Allergen V5/Tpx-1 family signature 96 109 IPR001283 -
Lsi03g00628 163 PRINTS Allergen V5/Tpx-1 family signature 50 68 IPR001283 -
Lsi03g00628 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Lsi03g00628 163 SMART SCP_3 29 159 IPR014044 -
Lsi03g00628 163 CDD CAP_PR-1 31 163 - -
Lsi03g00628 163 Gene3D CAP 25 163 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00628 K13449 PR1; pathogenesis-related protein 1 - csv:101210746 303.908
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00615 Lsi-Chr3:7678949 Lsi03g00628 Lsi-Chr3:7805463 1.57E-26 dispersed
Lsi03g00626 Lsi-Chr3:7785978 Lsi03g00628 Lsi-Chr3:7805463 1.59E-75 dispersed
Lsi03g00627 Lsi-Chr3:7796401 Lsi03g00628 Lsi-Chr3:7805463 6.03E-75 tandem
Lsi03g00628 Lsi-Chr3:7805463 Lsi03g00629 Lsi-Chr3:7821650 1.50E-58 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004442 0 2 0 0 0 2 0 2 2 1 1 2 4 1 2 3 2 0 2 2 1 0 0 1 1 1 8 1 2 0 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00628 Lsi_Chr03 FPKM 77.095863 81.575768 29.821568 29.545658 63.429741 63.955708 61.566673 22.94952 25.168463 21.858496