Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00638 ATGGCCGTCGAATACGAATGCTGCAGCCCCAATTTCTTCATCCACATACTCATCATCGTCCTCTTGGTCCTCTTCGCCGGCTTGATGTCCGGTCTCACCCTCGGCCTCATGTCCATGAGCCTTGTCGATCTCGAAGTCCTTGCCAAGTCCGGTACCCCCAAGGACCGCATACATGCCGCAAAGATATTGCCAGTTGTCAAAAACCAGCATTTATTGCTTTGCACACTACTGATATGCAATGCAGCAGCCATGGAGGCACTTCCTATTTTCCTTGATAGTCTGGTTACAGCTTGGGGTGCTATTCTAATCTCAGTGACATTGATTCTTCTATTTGGCGAGATTATTCCACAATCTGTTTGCTCTCGGTATGGTTTGGCAATTGGATCAACAGTTGCTCCCTTTGTCCGTGTTCTTGTCTGGATTTGCTTCCCTGTTGCATATCCAATCAGCAAGCTACTGGACTTTCTACTGGGCCATGGACGTGTAGCTCTTTTCCGTAGAGCTGAGCTGAAAACGCTTGTCAATTTGCACGGTAATGAGGCTGGAAAGGGTGGAGAACTGACACACGATGAAACCACTATTATTGCTGGAGCTCTTGAACTGAGTGAAAAGACAGCTGGTGATGCCATGACTCCTATATCTGAAACTTTTGCTATTGACATTAATGCGAAGCTTGATAGGAATTTGATGAATCTCGTTCTCGAGAAAGGGCATAGCAGGGTGCCTGTTTATTATGAAGAACCAACCAACATAATTGGTCTTATCCTGGTTAAAAATTTGCTGACAATCCACCCAGACGATGAAGTTCCAGTAAAGAGTGTTACCATTCGAAGGATTCCTAGGGTTCCAGAAACTATGCCATTATATGACATTTTGAATGAGTTCCAGAAAGGTCACAGCCACATGGCCATTGTTGTTAAACAGTGCAACAAAATGAATGGGAAACCTGATGATAAACCGGGCGATGATTCCCAGAAAGATGTTAGAATTGATGTGGATGGTGAAAAGCCCCCTCAAGAAAAAACTTTGAAGAACAAGAGGCCACTTCAGAAGTGGAAAAGCTTTCCAACCACAAACAGTTCATTTAGGAGTGGCTCTAGAAGCAAGAAGTGGACAAAAGATATGTACTCTGATATCCTGCAGATAGATGGAAGTCCTCTTCCTAAGCTGGCCGAGGAAGAAGAAGCTGTTGGTGTCATAACGATGGAAGATGTCATTGAAGAACTTTTGCAGGAGGAGATCTTTGATGAGACTGATCATCATTTTGAGGATTCATGA 1278 44.29 MAVEYECCSPNFFIHILIIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICFPVAYPISKLLDFLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTAGDAMTPISETFAIDINAKLDRNLMNLVLEKGHSRVPVYYEEPTNIIGLILVKNLLTIHPDDEVPVKSVTIRRIPRVPETMPLYDILNEFQKGHSHMAIVVKQCNKMNGKPDDKPGDDSQKDVRIDVDGEKPPQEKTLKNKRPLQKWKSFPTTNSSFRSGSRSKKWTKDMYSDILQIDGSPLPKLAEEEEAVGVITMEDVIEELLQEEIFDETDHHFEDS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7933581 7938911 + Lsi03G006380.1 Lsi03g00638 658388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00638 425 MobiDBLite consensus disorder prediction 312 347 - -
Lsi03g00638 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Lsi03g00638 425 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 425 - -
Lsi03g00638 425 Gene3D - 379 417 IPR046342 -
Lsi03g00638 425 MobiDBLite consensus disorder prediction 312 368 - -
Lsi03g00638 425 MobiDBLite consensus disorder prediction 351 366 - -
Lsi03g00638 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Lsi03g00638 425 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 425 IPR045095 GO:0010960
Lsi03g00638 425 Gene3D - 191 322 IPR046342 -
Lsi03g00638 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Lsi03g00638 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00638 K16302 CNNM; metal transporter CNNM - csv:101210339 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00865 Lsi-Chr1:6958534 Lsi03g00638 Lsi-Chr3:7933581 0 dispersed
Lsi02g01852 Lsi-Chr2:24270653 Lsi03g00638 Lsi-Chr3:7933581 3.62E-13 dispersed
Lsi03g00638 Lsi-Chr3:7933581 Lsi05g01188 Lsi-Chr5:19785605 3.66E-162 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g809 . . . . . Bpe12g00728 . . Cmo19g00530 Cmo11g01436 . . . . Sed06g0826 Cpe04g00341 Cpe15g00413 Bhi05g00995 Tan02g1077 Cmetu01g2263 Lac12g0132 Hepe02g0671 . . Cla02g00721 Cam02g0768 Cec02g0765 Cco02g0796 Clacu02g0763 Cmu02g0756 Cre02g1070 . Cone8ag1049 . . Lsi03g00638 Csa07g00654 . Cme01g00149 . Blo13g00274 Bda15g00473 . . . . Bma08g00022 . . . Cma11g01686 Cma19g00517 Car11g01154 Car19g00392 . . . . . . . . . . . . . . . . . . Chy01g00158 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001514 3 4 3 3 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00638 Lsi_Chr03 FPKM 2.882676 2.496325 1.005948 1.740772 7.635401 7.961589 6.910516 2.311697 1.706177 1.609022