Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00640 ATGGATGAGGAGACTCATGCTGTGAACGCAACCAGTGACGATTCCGGCGAAGATTTCTACGAGATGATCGAAGCGCCTAAGTTCGTCGACTTCACTGTTTCCGATCACTTCATTCCCGACGATCGTTACTGGTTCTGCTCCAGAGTCGGGTGTGAAGAGACGCATCCAGAAGAAATGGACTCTGATGTCGTTTTTAAGAACTTTGTTATGCGGGTAATGGCGGCCAGGAGTCCGAATGTACGGCTACAGAGAGCTCGAAGGAATCTGAAATGCCCCCTTACAGCTCCTCCAAAGTCTTCCAAGTCTAGAGTGGCAAGGCTAGCTCTGATATCTTCCATTTCCAAAAGGATAGCGGATGCAAGAGTGAAATCTAGACCGCCTACTGCCAAGCCTGCTGCGACTGCTAATGTAAAGCCAAAACAAGCTCATGCCAAGGCAATGACTACTCCAAGGAACAGGAAGCTTAACTCCAATACCAATTCTTTTCTGAGTGTTAAAAATTCTAAGACAACATCAACTGAAGAGCCAAAGACTACAACGGTAGCTAAGGCTTTGGTCTTTCAATCTCCAAAGAAAGATACGAAAAAGGAAACTTCAACAGAAGTGAACACTCCTGTGAAAACTATTTGTGCAGCAATGAAGAAACTCGAGATTACCAGTGCAAAGAAGAATGTATTAAGGGATGGACAGTCATTGCCCCAGAATGTTTTGAAGAAAAAGTTCAGAGGACGTGAGGTGAAGAGCCGGGTTTTTGATTCATTACAAACTCACAATTGCAAACGCCAGGATGCCAAATCTGTAAGAGTTTTGAAGAGGAGAAGCAAAGAAAAGAAGATAAAGCCGCCTCTTCCTGATCATGTTGCCCAAGAAATTGTTGATGAGGATGCCAGTGACATGGATATTGATGTGAAATCAAGGCAAGTTTCAATGCAAGGGTGCTCTCTGTCAATTTCTTCTAAGAGTAATGAAGGAAATCCAGATGAACTTTCAAGACCTGAAGATTCTGATAGTTTGTCCAAAGATTCTAATGAAACTTCAATTTCAAGTTCTGAAGAGAGATTTTCGGAAAAAAGTGATCTTGAGGTTGTTCTATGTGAAGTAGAGGACGGGAAGAACCAAGAATACTCTCATGAAGAGAAACTCAAACCAGGTGCTTCAGAACTTCTGGAGAGTGGTGATAAAGAAAATGCAGCTGAAATTAATGAAGGTAATGGAGAAGAAAAGGTTTTGCAAATTGTGGAGCCTCTGAACGAAAATACTAATAAAGTGTCCAAGAACTCTAGAGATGATGAGACTAAAGTATCAAATCCAGAGGAGAAAAATTCAGAAGCAAATGATTTCAAATCAGTTCTGTGCGAAGTGGAGCATGAGAAGAATAACAAATGCAATCATGAAGGGAGAATGAAATCAGGGGAAATACAGATGAATGTCTCAGAACTTGAGAGTGATGATAAAGAAAATGTAGCGAGTGTAAATAAGGAAAATGCAGTGACCTCCTCTGACGATGATATAGAGCATGAAAGTGAAACCACCACAGATGACAACAGGGAAAACAATTCTCAGGATCAGTCTGAAAGAGTGGCATTTGGCAGACTCGAGAGATCCAAAAATGCAGCAAATGCAGCAAAGATAAAAATGGTGCAGGTCCAAGGAATATTAATGAAGACTGTGAAAGAGAAATCTAATCCTGCTGCAGTTGGTACTCATGGGCTGAAACCCAGCAGACCAAAGTCCACGAATCCCAAGCCGTTCAGACTAAGAACTGATGAAAGAGGTGTACTTAGGGAAGCAAACTTGGGGAAAAAGCTTAATTGTCCTTTGAAAGACATCACTGCATCTCGAAGGTTTCACGGGGACAAGTTGGAGAGAAAAAATCAATACACGAAACAAAATTCTGAATGTGAACATCGTGTTGAGGAAGAACATGAACAAAGGATGTTAGAGGACAAAACCCCTGACGATCAACAAGGAGGAACAATTCCGGATTCCTTAAACAACAAAAAAGGAGATTCTGAACACAAGTTATGTACAATGGATTCACAAAATTGTTTTGCTTTAAAACACCAGAAACAGAGCTATTGTCGTCAGTTTGAATCTGGCAAAGAGAGAGCAACCAAGACAACAGAGGATAATTTGAAAAGGACTAAATTAGAAAAGATACAGCAAAGAGTTAGGAAGCCTAGAAGGGATGCATTATCTAAAGAAGAAGTACCTTCTCTGGTACCATCCCGCCTACACAGTGCAAGGAAGGAAACCTCTATGAAGATATCAAGTTGCAAAGATGCTAGAAAACCATCAGACGCATTATCTCGAAAAAGGAAGCCTGCTGCAACTGCTCCAAAGGAACCAAATCTTCATAGCAATCATCCACCAAGGAGAGCTGCTCAAGAAAATTGGCTAAGGTGA 2406 41.35 MDEETHAVNATSDDSGEDFYEMIEAPKFVDFTVSDHFIPDDRYWFCSRVGCEETHPEEMDSDVVFKNFVMRVMAARSPNVRLQRARRNLKCPLTAPPKSSKSRVARLALISSISKRIADARVKSRPPTAKPAATANVKPKQAHAKAMTTPRNRKLNSNTNSFLSVKNSKTTSTEEPKTTTVAKALVFQSPKKDTKKETSTEVNTPVKTICAAMKKLEITSAKKNVLRDGQSLPQNVLKKKFRGREVKSRVFDSLQTHNCKRQDAKSVRVLKRRSKEKKIKPPLPDHVAQEIVDEDASDMDIDVKSRQVSMQGCSLSISSKSNEGNPDELSRPEDSDSLSKDSNETSISSSEERFSEKSDLEVVLCEVEDGKNQEYSHEEKLKPGASELLESGDKENAAEINEGNGEEKVLQIVEPLNENTNKVSKNSRDDETKVSNPEEKNSEANDFKSVLCEVEHEKNNKCNHEGRMKSGEIQMNVSELESDDKENVASVNKENAVTSSDDDIEHESETTTDDNRENNSQDQSERVAFGRLERSKNAANAAKIKMVQVQGILMKTVKEKSNPAAVGTHGLKPSRPKSTNPKPFRLRTDERGVLREANLGKKLNCPLKDITASRRFHGDKLERKNQYTKQNSECEHRVEEEHEQRMLEDKTPDDQQGGTIPDSLNNKKGDSEHKLCTMDSQNCFALKHQKQSYCRQFESGKERATKTTEDNLKRTKLEKIQQRVRKPRRDALSKEEVPSLVPSRLHSARKETSMKISSCKDARKPSDALSRKRKPAATAPKEPNLHSNHPPRRAAQENWLR 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7990043 7993973 + Lsi03G006400.1 Lsi03g00640 658390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00640 801 Coils Coil 624 644 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 696 801 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 748 779 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 262 291 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 150 177 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 696 735 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 119 177 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 498 532 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 423 468 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 305 541 - -
Lsi03g00640 801 PANTHER NEUROFILAMENT HEAVY PROTEIN 423 796 - -
Lsi03g00640 801 PANTHER NEUROFILAMENT HEAVY PROTEIN 11 425 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 620 652 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 326 402 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 560 592 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 307 325 - -
Lsi03g00640 801 MobiDBLite consensus disorder prediction 620 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00640 - - - cmo:103495340 1216.83
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g820 . . . . . Bpe12g00727 . . Cmo19g00528 Cmo11g01438 . . . . Sed10g1931 Cpe04g00342 Cpe15g00411 Bhi05g00992 Tan02g1082 Cmetu01g1396 . Hepe02g0673 . . Cla02g00723 Cam02g0771 Cec02g0767 Cco02g0798 Clacu02g0765 Cmu02g0758 Cre02g1073 . . . Cone10ag1074 Lsi03g00640 Csa07g00652 . Cme01g00151 . . Bda15g00474 . . . . Bma08g00023 . . . Cma11g01685 Cma19g00515 Car11g01155 Car19g00390 . . . . . . . . . . . . . . . . . . Chy01g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008141 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00640 Lsi_Chr03 FPKM 4.251105 3.786272 3.901505 2.724855 3.007663 3.743912 3.647629 3.353249 3.918458 4.239847