Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00641 ATGACTAATTCACCACTTCCCACCCGAAAACCCTCCTGCCGCCGCCCTTCTCCGGTGGCTCTCCTCCTCCTCCTCTGTTCACTTTCCTTCTCCCATGGTGACGAACTTCAGTCACTTTTGGACCTCAAGTCTGCCCTCTCCAACAACTCAACCTTCTCTTCTTCCTTAGTTTTCAGCTCTTGGATTAAAGGGAAGGATGTTTGCAGCAGCTTCAATGGCATTGTCTGTGATTCCAATGGCTTTGTAGTGGAAATCAATCTCTCTGCTCAAAACTTATCTGGGATTCTTCCTTTTGATTCCATTTGCTCTTTGAAGTCTCTTGAGAAGTTGTCTTTTGGGTCGAATTTTTTGTATGGGAAGGTCAGTGATGGTTTGAGAAACTGTTCCAAGTTGAAGCATTTGGATTTGGGTCAGAATGTGTTTTCTGGTGAAGTCCCTGATTTGTCATCTTTAGTGGGATTGAGATTCTTGAGTTTGAATAACAGTGGGTTTTCTGGAGATTTTCCTTGGAATTCTCTTCTGAATCTTACTAATTTGGAGTTCTTGAGCCTTGGAGACAATTTATTTAACCCAACAACTTCATTCCCATCACAGATTCTTCAGCTTAACAACCTTCATTGGCTTTACCTCTCTAACTGCACCATTCATGGACAAATCCCATCAAGGATTGGGAACCTGTCTTTGCTTGAGAATCTTGAGCTCTCACAAAATAAACTCACAGGTGAAATTCCACCTGAGATTGTGAACCTGAAGAAGCTATGGCAGCTGGAGTTACATGAGAATTCCTTGACCGGGAAGCTTCCGGTCGGGTTCAGTAACCTTACTGGACTGAGGAAGTTTGATGCCTCATCTAATAATCTTGTAGGTGACTTGATGGAGTTGAGGTTCTTGACCAATCTGGAGTCCTTGCAGCTCTTTGAAAATCAATTTTCCGGTACGGTTCCGGAGGAGTTTGGGGACTTCAAAAACCTTGTTGAACTCTCTCTTTACCAAAACAAGCTCACTGGAAACCTCCCTCAAAGAATTGGATCTTGGGCAGCCTTCATTTTTATTGATGTTTCAGAGAATTTCTTGTCTGGACCTATACCTCCAGACATGTGCAAGCAGGGGAGTATGACTGATCTCCTGATGCTGCAAAACAATTTCATTGGTGGAATCCCAGAAAGCTACATGAACTGTAAATCTTTGAATCGTTTTCGTGTAAATAATAACTCTCTTTCGGGTGTTGTTCCTGCTGGGATTTGGAGCTTGCCAAATCTTACCATCATTGATCTTTCAATGAATCAGTTTGAAGGTCCTGTAACTTCAGATATCGGTAAAGCAAAAGCTCTTGCTCAGTTATTCTTATCGAATAACCGGTTTTCTGGAAACTTACCGGCCGAGCTTGGTGAAGTATCATCCTTAGTCTCAATCAAGCTCGATTCTAACCAATTTGTTGGTCCAATACCTGAATCACTTGGCAAGTTGAAGGACTTAAGCAGCCTTTCTTTGAACGACAACAAATTTTCCGAAAACATACCTAGCTCATTAGGCTCTTGCAGTTCTCTTTCTACCATTGATCTCTCAATGAATTCATTCTTTGGGCATATTCCAGACAATCTTGGATATTTGCCAATTCTAAACTCCTTGAATCTGTCGAATAATGAACTCTCAGGTGAAATTCCAACCAGTTTTTCGCAGTTGAAGCTAAGCAGTTTCGACCTATCTAATAATAGGTTAACTGGCCAAGTACCTGATTCACTCGCAATCCAAGCCTTTGATGAAAGTTTCATGGGAAATCCTGGCTTGTGCAGTGAGTCTCTTAGATACTTGAGTTCATGTTCACCAACCTCTAGATCATCCAGCCATCTCAGCTCGTTGCTGTCATGTACCATTGCTGGAATCCTGGTGCTGCTCGTGACCTTCTCGTTCTTGTTGTTTGTTAAATGGAAACATAACAAGGATGCTAAGCATTTACTGAAATCCAAATCGTGGGATATGAAGCCGTTCCGCATAGTGTGCTTCACGGAAAAGGAAATAATTGATTCAATCAATTCTCACAACTTGATAGGAAAAGGAGGATCTGGAAATGTGTACAAAGTGGTACTAAGTAACGGCAAAGAACTCGCTGTGAAACATATATGGCAGTCAAGCTCCAGGGACCAAACAAATTGTCGGACGAGTGCAACCATGTTAACTAAAAGAAAGACCAGGTCATCCGAATATGATGCAGAAGTAGCTACATTGAGTTCAGTGAGGCATAACAATGTGGTGAAATTATACTGTAGCATTTCGAGCGAGGATAGTAACCTGTTGGTCTACGAGTACTTACCAAATGGAAGTTTATGGGATCAGCTGCACACTAGCAGGAAGATTGAGATGGGATGGCAGATAAGGTACACGGTAGCGATTGGAGCAGCCAGGGGACTCGAGTATTTACATCATGGGTGTGACCGACCCGTGATTCACCGAGATGTGAAGTCGAGCAATATTTTGTTGGATAGTGATTGGAAACCTAGGATTGCAGATTTCGGGCTAGCTAAGATTCTGCAGGATGGCCATGGGGTTGGAGATTCATCTCATGTCATTGCCGGAACACTCGGATATATAGCCCCTGAATATGCATACACGTGCAAGATAGACGAGAAGAGTGACGTTTACAGCTTCGGAGTTGTCCTAACGGAACTAGTAACAGGAAAGAAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAAAGGTAATCTGAAAGATATGGTAGATCCTAGCATCTCAGAGGCTCAGGTAGAAGATGCAGTCAAAGTGCTAAGAATCGCACTTCGCTGCACGGCTAAGATTCCATCTACAAGGCCCTCCATGAGAATGGTAGTTCATATGCTTGAAGAGGCTGAACCTTACAACTTTATTGACATTGTGGTCAAGAAAGAATGTGAAAAGTGA 2955 42.77 MTNSPLPTRKPSCRRPSPVALLLLLCSLSFSHGDELQSLLDLKSALSNNSTFSSSLVFSSWIKGKDVCSSFNGIVCDSNGFVVEINLSAQNLSGILPFDSICSLKSLEKLSFGSNFLYGKVSDGLRNCSKLKHLDLGQNVFSGEVPDLSSLVGLRFLSLNNSGFSGDFPWNSLLNLTNLEFLSLGDNLFNPTTSFPSQILQLNNLHWLYLSNCTIHGQIPSRIGNLSLLENLELSQNKLTGEIPPEIVNLKKLWQLELHENSLTGKLPVGFSNLTGLRKFDASSNNLVGDLMELRFLTNLESLQLFENQFSGTVPEEFGDFKNLVELSLYQNKLTGNLPQRIGSWAAFIFIDVSENFLSGPIPPDMCKQGSMTDLLMLQNNFIGGIPESYMNCKSLNRFRVNNNSLSGVVPAGIWSLPNLTIIDLSMNQFEGPVTSDIGKAKALAQLFLSNNRFSGNLPAELGEVSSLVSIKLDSNQFVGPIPESLGKLKDLSSLSLNDNKFSENIPSSLGSCSSLSTIDLSMNSFFGHIPDNLGYLPILNSLNLSNNELSGEIPTSFSQLKLSSFDLSNNRLTGQVPDSLAIQAFDESFMGNPGLCSESLRYLSSCSPTSRSSSHLSSLLSCTIAGILVLLVTFSFLLFVKWKHNKDAKHLLKSKSWDMKPFRIVCFTEKEIIDSINSHNLIGKGGSGNVYKVVLSNGKELAVKHIWQSSSRDQTNCRTSATMLTKRKTRSSEYDAEVATLSSVRHNNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYTVAIGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDGHGVGDSSHVIAGTLGYIAPEYAYTCKIDEKSDVYSFGVVLTELVTGKKPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEAQVEDAVKVLRIALRCTAKIPSTRPSMRMVVHMLEEAEPYNFIDIVVKKECEK 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7993942 7997741 - Lsi03G006410.1 Lsi03g00641 658391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00641 984 SUPERFAMILY L domain-like 195 433 - -
Lsi03g00641 984 SMART LRR_sd22_2 104 127 - -
Lsi03g00641 984 SMART LRR_sd22_2 226 252 - -
Lsi03g00641 984 SMART LRR_sd22_2 321 340 - -
Lsi03g00641 984 SMART LRR_sd22_2 176 204 - -
Lsi03g00641 984 SMART LRR_sd22_2 489 508 - -
Lsi03g00641 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Lsi03g00641 984 ProSiteProfiles Protein kinase domain profile. 677 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00641 984 SUPERFAMILY L domain-like 69 189 - -
Lsi03g00641 984 Gene3D Phosphorylase Kinase; domain 1 661 769 - -
Lsi03g00641 984 Pfam Leucine rich repeat N-terminal domain 33 77 IPR013210 -
Lsi03g00641 984 SUPERFAMILY RNI-like 375 597 - -
Lsi03g00641 984 Gene3D Ribonuclease Inhibitor 194 346 IPR032675 -
Lsi03g00641 984 SMART LRR_typ_2 321 345 IPR003591 -
Lsi03g00641 984 SMART LRR_typ_2 176 202 IPR003591 -
Lsi03g00641 984 SMART LRR_typ_2 537 561 IPR003591 -
Lsi03g00641 984 SMART LRR_typ_2 489 513 IPR003591 -
Lsi03g00641 984 SMART LRR_typ_2 226 250 IPR003591 -
Lsi03g00641 984 SMART LRR_typ_2 297 320 IPR003591 -
Lsi03g00641 984 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 976 - -
Lsi03g00641 984 ProSitePatterns Protein kinases ATP-binding region signature. 683 705 IPR017441 GO:0005524
Lsi03g00641 984 SUPERFAMILY Protein kinase-like (PK-like) 657 966 IPR011009 -
Lsi03g00641 984 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 19 976 - -
Lsi03g00641 984 Gene3D Ribonuclease Inhibitor 349 615 IPR032675 -
Lsi03g00641 984 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Lsi03g00641 984 SMART serkin_6 677 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi03g00641 984 Gene3D Transferase(Phosphotransferase) domain 1 770 978 - -
Lsi03g00641 984 Pfam Protein kinase domain 680 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01030 Lsi-Chr1:8501519 Lsi03g00641 Lsi-Chr3:7993942 2.93E-16 dispersed
Lsi03g00641 Lsi-Chr3:7993942 Lsi11g01398 Lsi-Chr11:22525235 0 dispersed
Lsi03g00641 Lsi-Chr3:7993942 Lsi04g02307 Lsi-Chr4:30266100 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83472 PF00069 Pkinase 5.50E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00641 - - csv:101210252 1650.95