Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00644 ATGGAGAAATCATCTATGGTGGTTTTTTCTGAGATGGGAATGGAGGATAATGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGTATGCTCCCATTAGCAGCTACTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAGACAAACATTGACCAGAAGGCTTCTTTAAATCATTCTCACAATGCCACACTTGGGTATGTGAAACAGCTCAAAAGTGAAGGGTGGAGTTCATACCAAACAACTAATCATTTGCCAAACTCACAAGGCATTGCTTATCCGACCACATCTGTTTCAGCTTCGAACTACACGAATCAAATGGACTTCACAAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGGCTCATTAGCCTACCAAAGCCATGTGACCAAGTCGAATCGTGGAACAAGAAGTCCCTATACAAACAGTAGAATCCCCCAGGCTCAAGATCACATTCTTGCAGAGCGGAGACGGCGAGAGAAGCTCAGCCAGCGTTTTATCGCTTTGTCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTATCTGAAACAACTCCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATCGAATCTGTTGTATTCGTCAAGAAATCCCAAGTTTTCGCTGATGGAAACAACACATCTAAGGAGGAGGAGGAGCCACTTCCCGAAATCGAAGCAAGATTTTGTAACAAAACTGTCCTTATAAGAATACACTGTGAGAAAAAGAAAGATGTCTTAGAGAAAACAATTGCTGAAATTGAAAACTTGCACCTTACAATAGTCAACAGCAGTGTTATGTCATTTGGGAGTCTTGCTCTCGACATAACTATTATCGCGCAGATGGATAATGAATTCTGTTTGACGTTAAAGGACCTCGTGAAGAAGTTACAGTCTACTCTGCGCTTGTTTTAA 1005 42.49 MEKSSMVVFSEMGMEDNGFVNQWHKSSMDELGMLPLAATFGENLQHSYAQTNIDQKASLNHSHNATLGYVKQLKSEGWSSYQTTNHLPNSQGIAYPTTSVSASNYTNQMDFTRPKEEVVCPQSISNLPSDMLVSQGSLAYQSHVTKSNRGTRSPYTNSRIPQAQDHILAERRRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFVKKSQVFADGNNTSKEEEEPLPEIEARFCNKTVLIRIHCEKKKDVLEKTIAEIENLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLRLF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8103519 8106253 - Lsi03G006440.1 Lsi03g00644 658394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00644 334 PANTHER BHLH TRANSCRIPTION FACTOR 4 334 - -
Lsi03g00644 334 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 4 334 - -
Lsi03g00644 334 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Lsi03g00644 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983
Lsi03g00644 334 Gene3D - 160 233 IPR036638 GO:0046983
Lsi03g00644 334 CDD bHLH_AtNAI1_like 163 235 - -
Lsi03g00644 334 SMART finulus 167 216 IPR011598 GO:0046983
Lsi03g00644 334 Coils Coil 200 227 - -
Lsi03g00644 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00844 Lsi-Chr1:6761481 Lsi03g00644 Lsi-Chr3:8103519 4.53E-55 dispersed
Lsi01g00845 Lsi-Chr1:6769396 Lsi03g00644 Lsi-Chr3:8103519 2.16E-45 dispersed
Lsi03g00644 Lsi-Chr3:8103519 Lsi05g02130 Lsi-Chr5:28132824 3.87E-18 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24979 PF00010 HLH 2.40E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00644 - - csv:101209844 575.089