Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00645 ATGGCGGTTTCTTACCCCAAGCTCCAGTTACGGGACCTGGGAAACACCGGCCTCAAAACCAGCAGTATCGGCTTTGGTGCCTCCCCTCTTGGCAGCGTCTTCAGCCCCGTTTCTGAGGAGGATTCTGTCGCCGCCGTTCGTGAAGCCTTTCGTCTTGGCATCAACTTCTTCGACACCTCCCCGTACTATGGAAGGACCTTATCAGAAAAGATGCTTGGTAAGGGACTGAAAGCTCTAGGAGTTCCAAGGAGTGAGTATATAGTGTCAACAAAGTGTGGGAGGTATGGTGAGGGTTTTGATTTCAGTGCTGAGAGGGTGACAAGGAGCATTGATGAGAGTTTGGCTAGACTACAACTAGATTACGTCGATATACTGCATTGCCATGATATTGAATTTGGATCTCTTGATCAGGTTGTGAACGAGACGATTCCTGCACTTCAAAAGCTAAAGGAATCTGGGAAGACTCGTTTCATTGGTATTACAGGACTTCCGTTGGAAATATTTACGTATGTTCTCGATCGAGTACCACCTGGCACCATTGATGTGATTCTTTCATATTGTCACTACAGTATTAACGATTCAACATTGTTGGATTTGCTACCTTACTTGAAGAGTAAGGGAGTTGGAATAATCAGTGCTTCTCCTCTAGCAATGGGACTTCTAACCGATCATGGTCCCCCAGAATGGCACCCAGCTTCACCAGAATTGAAGTCTGCATGTCAAGCTGCAGCTGCTCATTGTAAAAAGAAGGGAAAAAATATTTCGAAGTTAGCCCTCCAATACAGTCTGGTAAACAAAGATATTTCAACAGTGCTGGTTGGCATGAACTCTGTCAGACAGGTGGAGGAAAACGTAGCTGCTGCTGAAGAACTCGCCACATTTGGGAGGGATGAGGAAACTCTATTGGAGGTTGAAGCTATCCTTATCCCTGTCAAGAATCAGACATGGCCAAGTGGAATCCAAAAGAGCTGA 972 45.88 MAVSYPKLQLRDLGNTGLKTSSIGFGASPLGSVFSPVSEEDSVAAVREAFRLGINFFDTSPYYGRTLSEKMLGKGLKALGVPRSEYIVSTKCGRYGEGFDFSAERVTRSIDESLARLQLDYVDILHCHDIEFGSLDQVVNETIPALQKLKESGKTRFIGITGLPLEIFTYVLDRVPPGTIDVILSYCHYSINDSTLLDLLPYLKSKGVGIISASPLAMGLLTDHGPPEWHPASPELKSACQAAAAHCKKKGKNISKLALQYSLVNKDISTVLVGMNSVRQVEENVAAAEELATFGRDEETLLEVEAILIPVKNQTWPSGIQKS 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8145486 8149042 + Lsi03G006450.1 Lsi03g00645 658395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00645 323 Gene3D - 8 315 IPR036812 -
Lsi03g00645 323 SUPERFAMILY NAD(P)-linked oxidoreductase 8 302 IPR036812 -
Lsi03g00645 323 Pfam Aldo/keto reductase family 23 289 IPR023210 -
Lsi03g00645 323 PANTHER GH17980P-RELATED 7 319 IPR020471 GO:0016491
Lsi03g00645 323 CDD AKR_galDH 11 290 IPR044479 GO:0010349
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00645 K17744 GalDH; L-galactose dehydrogenase [EC:1.1.1.316] - csv:101206435 599.742
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00645 Lsi-Chr3:8145486 Lsi11g00039 Lsi-Chr11:455948 7.47E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g827 . . . . . . . . Cmo19g00525 . . . . . . . Cpe15g00407 Bhi05g00984 . . . . . . Cla02g00730 Cam02g0776 Cec02g0774 Cco02g0803 Clacu02g0771 Cmu02g0764 Cre02g1078 Cone12ag1017 Cone8ag1046 . . Lsi03g00645 . . . . . . . . . . . . . . . Cma19g00512 . Car19g00386 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007468 1 3 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00645 Lsi_Chr03 FPKM 5.655419 5.814943 191.102539 183.07402 12.31498 14.686935 13.889375 36.837955 38.057713 35.737629