Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi03g00647 ATGGAACTGAGTGCACTCAGCTATCTCACCGGTCTCTACCTTGGGCCCTTGGATTTGTCACCTGAAGTTTTACCTCCCATGGCTTCGTCTGAGATTGAGGTCGTAGCATCACCCAACTCGAAATCTCAGACAAACCCTGAAGTTGCCATCGTAGACGTCTACTCTGCTTCTGCTTATGGTGACTTCCAGAAAGTCAGGAGTTTCGTAGAAGAGCATGGAGCTTCTCTTTCGGTTCCTGATTCCAACGGGTACCATGCTCTGCAATGGGCTGCTCTAAACAACTTCCCCGATATCGTCCAGTACATCATTGAGCATGGAGCAGATGTCAATTCTTGTGACAAATTGCAGCAGACAGCACTTCACTGGGCAGCAGTTCGGGGTTCGATTATGGCTGCAGACATCCTCCTGCTGAATGGAGCTCGAGTGGAGGCAGCTGATATAAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATATGGACAAACTGCATTCTTGAATCACATTGTTGCCAAATTCCATGCTGACTTTGACGTTCCAGATAATGAAGGGAGGAGTCCTCTTCATTGGGCTGCATACAAAGGATTTGCAGATACAATTAGACTTCTTTTATTCAGAGATGCAAGCCAAGAAAGACAAGATAAAGAAGGTTGTACCCCTTTGCATTGGGCTGCAATAGGAGGAAACGTGGAGGCATGCACTGTTCTTGTGCATGCAGGAACGAAGAAAGAATTGTTGATCAAAGACAATGCCGGTTATACACCTTTTCAACTTGCAACTGATAAAGGTCATCGGCAAATTGCTCATATCCTCTCTAAAGCACAACGGAAGCATCACAGCCACTTGGGAGCAAAATTTTGTACTTGGAAGATAGAAAATTTTGGTTATGCCCCTATTTTACTATGTGCCATCATTATTCTGGTGATCCTCTTCATCAATTCAGTTCTTGCAGGCTCTAATCTTGCAAAGGTTACTGCTGTCATTGGACTTTGGGCGTGGACTGCCCTCTGTTTGGCATTTGTTTCTCTGATAATGTTTTATAGGTGTAGTAGTAAAGATCCAGGCTATATAAAAAGACTCGGAGAGTTGGGCAATCCTACCAATACAGAGGAAAATTTGTTCTTCTTTAGGTATTTGTCTTTTCATATACCTCTAGCCAATGATGTCTCCAAAAGATTGGTGGGGTCTCCTCCCATGTCAGGTGAAAAGGACTTCGTAGAAAAGGGACCATTGGGATTAAGAGGCCATCTCCATGAATCATCCAAATGCGAGACAGCAATTGGGACTAAGTCCATGCTGAGTCCAGAAATGAGTGGAAGCGCTGCCTTCAACAAGGATCCTTTGTTGAGCATTGATCTCAACAATTCTTCAGTATGGGTGGGGAATTGGTCTCAGCTATGCCCCACATGCAAGATAATTAGACCCGTTCGTTCGAAGCACTGTCCTACTTGTAATCGATGTGTGGAACAATTTGACCATCACTGCCCGTGGATATCTAATTGTGTGGGGAAGAGGAATAAACGGGATTTTTTTGTTTTCATCTGCTTGGGAACTTTGACATCATTCCTTTCTGGCTATATTGCCATACTAAGAATCTGTACAGTGCCTTCAGCATTGCCAACTGGAGAAACTTGGTTTCATCATGTGGTAGTTCATTATCCTGGAGTCGTTACATTTCTCTTTCTGGATGCTGTTATATTTATTGCTGCCACAACTTTGACCGTAGCTCAGGCATCTCAGAATGATGATTCGTTGATGCAGATAGCACGAAATATCACCACTAACGAACTGTCAAATGCCATTCGGTATGGATATCTTCGTGGTCCAGATGGGAAATTTCGGAATCCATATAATCATGGATGTCGAAAGAATTGCTCTGATTTTCTCATTCAAGGCTATACAGACGACGAGATTGCTTGGCCTCCATTACAGCGTGCTGCCAGTTAG 1944 43.98 MELSALSYLTGLYLGPLDLSPEVLPPMASSEIEVVASPNSKSQTNPEVAIVDVYSASAYGDFQKVRSFVEEHGASLSVPDSNGYHALQWAALNNFPDIVQYIIEHGADVNSCDKLQQTALHWAAVRGSIMAADILLLNGARVEAADINGYRAVHVAAQYGQTAFLNHIVAKFHADFDVPDNEGRSPLHWAAYKGFADTIRLLLFRDASQERQDKEGCTPLHWAAIGGNVEACTVLVHAGTKKELLIKDNAGYTPFQLATDKGHRQIAHILSKAQRKHHSHLGAKFCTWKIENFGYAPILLCAIIILVILFINSVLAGSNLAKVTAVIGLWAWTALCLAFVSLIMFYRCSSKDPGYIKRLGELGNPTNTEENLFFFRYLSFHIPLANDVSKRLVGSPPMSGEKDFVEKGPLGLRGHLHESSKCETAIGTKSMLSPEMSGSAAFNKDPLLSIDLNNSSVWVGNWSQLCPTCKIIRPVRSKHCPTCNRCVEQFDHHCPWISNCVGKRNKRDFFVFICLGTLTSFLSGYIAILRICTVPSALPTGETWFHHVVVHYPGVVTFLFLDAVIFIAATTLTVAQASQNDDSLMQIARNITTNELSNAIRYGYLRGPDGKFRNPYNHGCRKNCSDFLIQGYTDDEIAWPPLQRAAS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8165978 8175162 - Lsi03G006470.1 Lsi03g00647 658397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi03g00647 647 SUPERFAMILY Ankyrin repeat 55 273 IPR036770 -
Lsi03g00647 647 PANTHER PROTEIN S-ACYLTRANSFERASE 24 29 358 - -
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat profile. 82 114 IPR002110 GO:0005515
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat profile. 215 239 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 82 111 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 148 178 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 215 244 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 182 211 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 250 279 IPR002110 GO:0005515
Lsi03g00647 647 SMART ANK_2a 115 144 IPR002110 GO:0005515
Lsi03g00647 647 PANTHER - 29 358 - -
Lsi03g00647 647 Pfam DHHC palmitoyltransferase 464 597 IPR001594 GO:0016409
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat region circular profile. 182 214 - -
Lsi03g00647 647 Pfam Ankyrin repeat 82 110 IPR002110 GO:0005515
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat region circular profile. 115 146 - -
Lsi03g00647 647 Pfam Ankyrin repeats (3 copies) 213 272 IPR002110 GO:0005515
Lsi03g00647 647 Pfam Ankyrin repeats (3 copies) 120 212 IPR002110 GO:0005515
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat region circular profile. 215 239 - -
Lsi03g00647 647 ProSiteProfiles DHHC domain profile. 464 514 - -
Lsi03g00647 647 Gene3D - 148 303 IPR036770 -
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat profile. 115 147 IPR002110 GO:0005515
Lsi03g00647 647 ProSiteProfiles Ankyrin repeat region circular profile. 82 114 - -
Lsi03g00647 647 PANTHER PROTEIN S-ACYLTRANSFERASE 24 443 635 - -
Lsi03g00647 647 Gene3D - 48 147 IPR036770 -
Lsi03g00647 647 PANTHER - 443 635 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi03g00647 K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17 [EC:2.3.1.225] - twl:120004022 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00647 Lsi-Chr3:8165978 Lsi11g00362 Lsi-Chr11:3763433 0 dispersed
Lsi03g00647 Lsi-Chr3:8165978 Lsi10g01370 Lsi-Chr10:17857683 3.77E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g828 . . . . . . . . Cmo19g00523 . . . . . . . Cpe15g00405 Bhi05g00980 Tan02g1093 . Lac12g0121 . . . Cla02g00732 Cam02g0777 Cec02g0776 Cco02g0805 Clacu02g0772 Cmu02g0765 Cre02g1079 Cone12ag1016 Cone8ag1045 . . Lsi03g00647 . . . . . . . . . . . . . . . Cma19g00510 . Car19g00384 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006934 1 4 1 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi03g00647 Lsi_Chr03 FPKM 1.849074 2.131184 2.019048 1.417372 1.700872 1.30812 1.756805 5.859963 4.437092 4.281488